BAC Information

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BAC

Clone NameMSMg01-096M08
Chromosome14 (Build37)
Map Location 45,712,760 - 45,713,205
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr, Ptger2, LOC100041591
Downstream gene5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379, LOC666834, LOC100041685, LOC625377, LOC218963
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096M08.T7 (MSMg01no096_m08.b1)MSMg01-096M08.TJ (MSMg01no096_m08.g1)
ACCAG313370AG313371
length701708
length of high quality
(start - end)
440 (72 - 511)249 (67 - 315)
definitionCHROMAT_FILE: MSMg01no096_m08.b1 PHD_FILE: MSMg01no096_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:15 2005CHROMAT_FILE: MSMg01no096_m08.g1 PHD_FILE: MSMg01no096_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCG
CGGAATTCTCAGACTCTTCAGGTAGGCACTGGTCTTCTGCCAGAGACATT
TCTCTTTGCATCTTTTAAACTGTTCACTGCTTAGCTTGATTACAATTTGC
CCGAGTCTTTTCCTTGAGGAGCCCTTCTCCAGTCCGCAGGAATCAGTAAT
TTCCATCCAACCCCATCCCCTTTCCTTGGTTCATTGTTTCTTATATTTTC
TCTCAGTACCTGATTTCACAGGCTTCCTTCTTTGTTCATTGTTTCTGATG
TATTTTAGTAAAATGCATGCTTACAAAGGGTGAAAACTGCACCTCTTTTT
CTTATACCTTTCCCAGTGTCTACTCTGTGCCAGACGCTCAGTAAAAATTA
GTTCAAAGAATAATTAAGTTAATGAATGGCTGCACTGGGAAAGATAGAAA
GAGAACTCTTCATAAGGTGCCTTGTGTGCTGTGCTAAGAATGTCATTTCC
TCCCTTGACAATAAGGGAGTTTAAGCGGAAGGCAATGCTGGGGGCGGATA
TAGAGTAGGCCAGCTTGATTTAAACACTTTCTTTTTTTTTTTTCTTTTCT
TTCTGGATTTCCGAGACCGGGTTTCTCTATATCGCCCTGGCTGCCCTTGT
AACTCACTCTGTATACCAGGCTGTCCTCAAACTTAAAAACCTGTCTACCC
G
CAATGAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGAAATTCTCTGTTTAGCTCTGATACCCATTTT
TAAATAGGGCTATTTGGTTTTCTGGAGTCTAACTTCTTGAGTTCTTTGTA
TATATTGGACATTAGCCCTCTATCAGATGAAGGATTGGTAAAGATCTTTT
CAAAATCTGTGGGTTGCCATTTTGTCCTACTGACAGTGTCCTTTGCCTTA
CAGGAGCTTTGCAATTTTATGAGGTCCCATTTGTCGATTCTTGATCTAAG
AGCATAAGCTATTGGTGTTCTATTTTGGAACTTTTCCCCTGTGCCCATGT
ATTCAAGGCTCTTCCCCACTTTCTCTTCTATTAGATTCAGTGTATCTGGC
TTTATATGGAAGTACTTGCACCCACTTGGACTTGAGCTTTGTACTAGGAG
ATAAGAATGGATCATTTTGCCTTTCTTCTACATGTTGTACTCCAGTTGAT
ATTTCTCCATTTGCTGAAAATGTTGACCTTTTTCTACTGTACGGTCTTAG
CTATTTTGCCCTATATGACCCTGCTTTTCTCGTGTGTCATCATTCCCGGG
TCCTCCCTTTCTTCCCTCCGACTACTTGTCTGTTCTTGCGTCAATGTCTC
TTTTTTACTTTCTATATCTTGTTTCGTTTTAACGATCGTTTGTTCTTTCT
GCGACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_m08.b1 MSMg01no096_m08.b1 CHROMAT_FILE:
MSMg01no096_m08.b1 PHD_FILE: MSMg01no096_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:15 2005
         (440 letters)



>mm_chr14_45712705_45713544
          Length = 840

 Score =  683 bits (353), Expect = 0.0
 Identities = 418/447 (93%), Gaps = 14/447 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtaggcactggtcttctgccagagacatttctctttgcatcttttaaactgttcactgct 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaggcactggtcttctcccagagacatttctctttgcatcttttaaactgttcactgct 442

                                                                       
Query: 61  tagcttgattacaatttgcccgagtcttttccttgaggagcccttctccagtccgcagga 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 441 tagcttgattacaatttgcccgagtcttttccttgaggagcccttctctagtctgcagga 382

                                                                       
Query: 121 atcagtaatttccatccaaccccatcccctttccttggttcattgtttcttatattttct 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 381 atcagtaatttccatccaaccccatccccttttcttggttcattgtttcttgtattttct 322

                                                                       
Query: 181 ctcagtacctgatttcacaggcttccttctttgttcattgtttctgatgtattttagtaa 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcagtacctgatatcacaggcttccttctttgttcattgtttctgatgtattttagtaa 262

                                                                       
Query: 241 aatgcatgcttacaaagggtgaaaactgcacctctttttcttatacctttcccagtgtct 300
           |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 261 aatgcatgcttacaaagggtgaaaaccgcacctgtttttcttatacctttcccagtgtct 202

                                                                       
Query: 301 a------------ctctgtgccagacgctcagtaaaaattagttcaaagaataattaagt 348
           |            |||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 201 aaaacagtgtctactctgtgctagacactcagtaaaaattagttcaaagaataattaagt 142

                                                                       
Query: 349 taatgaatggctgcactgggaaagatagaaagagaactcttcataaggtgccttgtgtgc 408
           ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| || 
Sbjct: 141 taacgaatggctgcactgggaaagatagaaagagaactcttcataaggcgccttgtatga 82

                                      
Query: 409 tgtgctaagaa-tgtcatttcctccct 434
           ||| ||||||| | |||||||||||||
Sbjct: 81  tgttctaagaact-tcatttcctccct 56


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)