BAC Information

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BAC

Clone NameMSMg01-097B20
Chromosome14 (Build37)
Map Location 32,375,121 - 32,375,414
singlet/doubletsinglet
Overlap geneColq
Upstream geneTkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1
Downstream geneHacl1, Btd, Ankrd28, Galntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618, Ercc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097B20.T7 (MSMg01no097_b20.b1)MSMg01-097B20.TJ (MSMg01no097_b20.g1)
ACCAG313628AG313629
length6981,204
length of high quality
(start - end)
295 (70 - 364)---
definitionCHROMAT_FILE: MSMg01no097_b20.b1 PHD_FILE: MSMg01no097_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:44 2005CHROMAT_FILE: MSMg01no097_b20.g1 PHD_FILE: MSMg01no097_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAA
TCCTTGCCATCAGGTGCAGGTCCTCATGGCCACCCATGACATCGGATGGC
TCTGGCCTGCTTTTGACAAATCCCATGAGCTGGTTCTGCTGGAATCCCCA
CAACCCTCGTCTCTTCTTAGCACCTTTCCGTCCACCCATTCACTGGTTCC
GTGCCTGTATGTCCCCACTCGTCCTTGTAGCTGATCTAGACCTTTGCTTC
CCTCTGAGCAACGGCAACGGCAAAAGCCTTGAGTTATATTACTCTCTCCA
GATCCACTGCCTTTGTTGTCTTGGGATGGCCCTACATTCTACTGAAGTCT
GTATATATTTCTCGAATGTCTGTGTCTTTTCTATACTAAAATAATGGTGG
TCTGGATTAGCGCTTTGCACACATTTTGCTCGCCCTCTTGGCTGACCGTC
TCCATTTGACAAAGGGGAAAATGACTCTTGTTGAAGCCATGTTACTAGGT
CTGGGCTACAGAGCTAGAACCGACTTGCACAAGGAGTGTGCAAGGAACTT
TGCAGATCCTTGTGAGGAGGTGGCCTCCCATAGCCATCTTAGTCAGGCTT
GTGGGACATCTCATTTGAACCCAGCCACTTGCAACCTTCCTGTTCTTCCC
ACTGCTTCTGTGTGGCTCACAGCTTCCCTCCCTTCTGATCAATCTCTA
CCCACCCCCCCAANNAANNCCCCNNNNNCCCTTTTNCCCTTTNNTTTTCT
TNTTATTTNTNCTTATCCCNTTNNCCCCCATATACAAAAAAGACGTCGCA
CNCGATCGGATCGGCATGACCCTCTCTTACTAAAACAAACGACACGTAGT
AAACGGGTATCTCTTTGCAAATTATACATGAGCGCCGCAACAATTAAACA
CAAACCCCCGATTCGACACCCGTCCGTGCCTTACAGCGACGACAATGTAA
ACCCGCGACCGCAACCATTAATGCAGAACGCTCTCCGTCGCTTTATCCTT
GGCTTTATGGCGCTTTATTGAATTGTCCGTGTATGGTAGCCCATACCTCG
CCACAATCACCTACGACTCACGGTGCCGCTATCCATATTCGGGTGTGCGT
TACCGCAACGCCATTTGCGGTACCTACAGAATTAATTCTATTAGAGGGTG
CGGTTGAAGTAATACCTATCATTATACAAACAAGTTCTTTACTCTCACCA
ACAATAATATGCCCGTTTGTGTAAACGAGCCGGCTCACACCCTTACAGAC
ACACTATAACCGCCAAGCGCGCCCTTCTCGCGCTCGAACTATTATAGATA
TGCAATCTTTCTTAATTATCCACCATTTTATGTGTTCGCCCGCCTCATAC
CCGATCAGTAAATGCCGGTATGTATTCGCTACAGATCATCCGCGCGATAT
AACCCGTTTGGGTCACATTCGCATATGTCACACACTTGATAATCAGATGG
TGGGTATACACAATCTACACAATATTAATACAATAATTTGCACCTCGAGG
TCCCCTGTGATATATTGAACACCCACGGCGCGCACCGCGTAACAACACAT
CACTAACACTAATAAATGTTTATTATATACTCACACCACAATATATGTAA
ATCCACTCTCNGCAGTTGTCCCGTTTAGCCTTATGACCATATAGACCGAT
TGGCGCGTGTTGACACAGTTACATATAATACTATTAAACACCCCCTATAC
GCCTTTATGTGATAATATATATATACACCCACGCCCGCCGCCACACACAC
CGCGCGCCGTTGCCATACTGTTCCTGATTAATCACTCATCATCTCTAATA
CGCGAGCTTATAGATGTCTTAGGCGATGCTCAACAACGAAAACGGTGCGC
CGACGCGCTACCACGATTAATAACACCGCTACTTATACACCTATAATATA
TATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_b20.b1 MSMg01no097_b20.b1 CHROMAT_FILE:
MSMg01no097_b20.b1 PHD_FILE: MSMg01no097_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:44 2005
         (295 letters)



>mm_chr14_32374921_32375616
          Length = 696

 Score =  468 bits (242), Expect = e-136
 Identities = 281/294 (95%), Gaps = 1/294 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcctcatggccacccatgacatcggatggctctggcctgcttttgac-aaatcccatga 59
           |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 gtcctcatggccacccgtgacatcggatggctctggcctgcttttgacaaaatcccatga 260

                                                                       
Query: 60  gctggttctgctggaatccccacaaccctcgtctcttcttagcacctttccgtccaccca 119
           ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctggttctgccggaatccccccaaccctcgtctcttcttagcacctttccgtccaccca 320

                                                                       
Query: 120 ttcactggttccgtgcctgtatgtccccactcgtccttgtagctgatctagacctttgct 179
           ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 ttcactggttccgtggctgtatgtccctactcgtccttgtagctgatctagacctttgct 380

                                                                       
Query: 180 tccctctgagcaacggcaacggcaaaagccttgagttatattactctctccagatccact 239
           ||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 381 tccctctgagcaatggcaacggcaaaagctttgagttatattattctctccagatccact 440

                                                                 
Query: 240 gcctttgttgtcttgggatggccctacattctactgaagtctgtatatatttct 293
           ||||||| ||||||||||| ||||||||||||||||||||||| | ||||||||
Sbjct: 441 gcctttgctgtcttgggatagccctacattctactgaagtctgcaaatatttct 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 696
Length adjustment: 9
Effective length of query: 286
Effective length of database: 687
Effective search space:   196482
Effective search space used:   196482
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)