BAC Information

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BAC

Clone NameMSMg01-097D21
Chromosome14 (Build37)
Map Location 80,771,441 - 80,893,770
singlet/doubletdoublet
Overlap geneLOC672828
Upstream geneNarg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097D21.T7 (MSMg01no097_d21.b1)MSMg01-097D21.TJ (MSMg01no097_d21.g1)
ACCAG313723AG313724
length714713
length of high quality
(start - end)
169 (128 - 296)407 (73 - 479)
definitionCHROMAT_FILE: MSMg01no097_d21.b1 PHD_FILE: MSMg01no097_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:55 2005CHROMAT_FILE: MSMg01no097_d21.g1 PHD_FILE: MSMg01no097_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,893,602 - 80,893,770)(80,771,441 - 80,771,847)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACCTGAGATCACGATCCACCCTGCTTGCGGCAGCTCCTCTTGAGGGAG
TGGATTTAACATTAAGATACACACAGCACCAGGGAAACTCACAACAATCA
TGATTTTTCTCCAGGGCTGGTTTCCAGTCAGAGCCTTTTAGAAGGGTTGT
CCTTGCCTCTCCCCAAGCTTCCGATGACTTATAATAGCTGGTTGGCTTAT
AGGAGCAGCTTCTCGTTTCTACCTTCTTGTATGCATTCTCCTTATGGAAT
GTTTGTATTTACTTTTCCTATGTTCACAAGGACAGCAGGTATATTAGATT
AGGGCCCTACCCAACTTCACCTAAAGTTGAGCAACTGCTTATGCAATGAC
CTTATTTCCAAACCAGGCTGCTCTTCTATAAATAAATGTATCAATGGCGT
TTTACTCATTTAGTTTCATTTTCTGTGATAGACATGGCTTATTTACATCC
CCATGGGCTGTGAATGGATACACATAAGAGAAAGCATCTTTTCTTCCATA
CTCTAATGGAGTGCCCCACTCCAAGTCATTGGATGAAAATGAAGATGAAA
ATAGTAATATAAGTTAAGGTTCGAGAATTTCGACCTCTTTATCTCATGTC
AGATAAAAGAGCAATAGCCATTCTTATAATCACCACGTATTTCTGGATTT
ACCATTTTTCCTCC
ATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGGAGTTCAGCACTGCACATCAGCATGT
CAGCTTACTTTATTAGCCCAGCATACCCTCACATCTTGATATGAGCACTG
GATTCTGTATAGCCACTAACTGAAATTCTGCTCCTTTCTTGTATCCTTTA
TCTATGTTTGGATATTGTCTGAGATGGGCTTTAAGCTAGTACTGAGTCTT
CATATATTACAAAATATGAATATACTCACGACATTCTACAGCTCCGCACT
ATATTCCCAATGAAGAGCCTCATATAAGCCACCACCTGACCTGGCTAACT
GCAGAAACAAGTCCCTTCTTTGTCTCCTTATGGCCACTGTGAGGTACCTG
AGATACTTTCTTCTCACATCTAGTCGGATATTTCAAAAGTATAAATCAGA
TCATAGCAGCCTTTTCTTAATACTAACCCTGCAGTGGCTTCCAAGGGCTC
TAAATCATGTGGTCTCCAGAACCTTTTAGCTCTGGAGTGTTTGGTTCCAG
ATGGCAAGCCCAATCCACTCTCTTAGGGACTAGCCCAGAACATGGACTAC
ACAGAATGAAAGAAGCATACGATGCGCAAATGCGAAGCAAACAAAAAGAA
TTCTTCTGGACCTGGCACAATTGGGACCATTTGTGAACTCCCTGCAACTG
CCATCCCCTGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_d21.b1 MSMg01no097_d21.b1 CHROMAT_FILE:
MSMg01no097_d21.b1 PHD_FILE: MSMg01no097_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:55 2005
         (169 letters)



>mm_chr14_80893402_80893970
          Length = 569

 Score =  311 bits (161), Expect = 1e-89
 Identities = 167/169 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accagggaaactcacaacaatcatgatttttctccagggctggtttccagtcagagcctt 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 accagggaaactcactacaatcatgatttttctccagggctggtttccagtcagagcctt 310

                                                                       
Query: 61  ttagaagggttgtccttgcctctccccaagcttccgatgacttataatagctggttggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttagaagggttgtccttgcctctccccaagcttccgatgacttataatagctggttggct 250

                                                            
Query: 121 tataggagcagcttctcgtttctaccttcttgtatgcattctccttatg 169
           || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tagaggagcagcttctcgtttctaccttcttgtatgcattctccttatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no097_d21.g1 MSMg01no097_d21.g1 CHROMAT_FILE:
MSMg01no097_d21.g1 PHD_FILE: MSMg01no097_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:55 2005
         (407 letters)



>mm_chr14_80771241_80772047
          Length = 807

 Score =  772 bits (399), Expect = 0.0
 Identities = 405/407 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggagttcagcactgcacatcagcatgtcagcttactttattagcccagcataccctcac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 aggagttcagcactgcacatcagcatgtcagcttactttattagcccagcgtaccctcac 260

                                                                       
Query: 61  atcttgatatgagcactggattctgtatagccactaactgaaattctgctcctttcttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcttgatatgagcactggattctgtatagccactaactgaaattctgctcctttcttgt 320

                                                                       
Query: 121 atcctttatctatgtttggatattgtctgagatgggctttaagctagtactgagtcttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcctttatctatgtttggatattgtctgagatgggctttaagctagtactgagtcttca 380

                                                                       
Query: 181 tatattacaaaatatgaatatactcacgacattctacagctccgcactatattcccaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatattacaaaatatgaatatactcacgacattctacagctccgcactatattcccaatg 440

                                                                       
Query: 241 aagagcctcatataagccaccacctgacctggctaactgcagaaacaagtcccttctttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagagcctcatataagccaccacctgacctggctaactgcagaaacaagtcccttctttg 500

                                                                       
Query: 301 tctccttatggccactgtgaggtacctgagatactttcttctcacatctagtcggatatt 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctccttatggtcactgtgaggtacctgagatactttcttctcacatctagtcggatatt 560

                                                          
Query: 361 tcaaaagtataaatcagatcatagcagccttttcttaatactaaccc 407
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaaaagtataaatcagatcatagcagccttttcttaatactaaccc 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)