Query= MSMg01no098_m23.b1 MSMg01no098_m23.b1 CHROMAT_FILE:
MSMg01no098_m23.b1 PHD_FILE: MSMg01no098_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:02 2005
(496 letters)
>mm_chr14_28294442_28295341
Length = 900
Score = 862 bits (446), Expect = 0.0
Identities = 477/500 (95%), Gaps = 22/500 (4%)
Strand = Plus / Minus
Query: 1 ttaaatatagcttgaggtactaagccaaaatcctatcaatatttacactgctggcttata 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 598 ttaaatatagcttgaggtactaagccaaaatcctataaatatttacactgctggcttata 539
Query: 61 cctgtgtaaaaacactatacaaaagctttaatca----aaatagttgacatttcagcaaa 116
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 538 cctgtgtaaaaacactatacaaaagctttaatcaaaataaatagttgacatttcagcaaa 479
Query: 117 attagttatcatctgacattaaagaacgtcattactatttaccattcttttataaacatg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 attagttatcatctgacattaaagaacgtcattactatttaccattcttttataaacatg 419
Query: 177 aaattttacatataaaacagacttcaatttgaagcccaagtacaggtaacaaatgtaaaa 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aaattttacatataaaacagacttcaatttgaagcccaagtacaggtaacaaatgtaaaa 359
Query: 237 ctgaaaggtgctaacatgagataatctgattacaatatgtcaaaaaattatttcaaattt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ctgaaaggtgctaacatgagataatctgattacaatatgtcaaaaaattatttcaaattt 299
Query: 297 tcagatgcttcaatgttatataggccatcatgatttaaataaacaggaaaggaaaaaaaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tcagatgcttcaatgttatataggccatcatgatttaaataaacaggaaaggaaaaaaaa 239
Query: 357 ttcagaaaggccaagaaacttgtttataaatcatcaattcacttttaagaaactgaaaaa 416
|||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 238 ttcagaaaggccaagaaacttgtttataaatcatcaat-------------ac-----aa 197
Query: 417 agtccaccacaacctattttttttaatcactgtaatttctccttgaacacatccttaact 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 agtccaccacaacctattttttttaatcactgtaatttctccttgaacacatccttaact 137
Query: 477 taatggagatttctctgtac 496
||||||||||||||||||||
Sbjct: 136 taatggagatttctctgtac 117
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 900
Length adjustment: 10
Effective length of query: 486
Effective length of database: 890
Effective search space: 432540
Effective search space used: 432540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_m23.g1 MSMg01no098_m23.g1 CHROMAT_FILE:
MSMg01no098_m23.g1 PHD_FILE: MSMg01no098_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:02 2005
(394 letters)
>mm_chr14_28150341_28151133
Length = 793
Score = 723 bits (374), Expect = 0.0
Identities = 389/394 (98%), Gaps = 1/394 (0%)
Strand = Plus / Plus
Query: 1 tgtataggtgtgttttgggggttggtagcatcagagatccatttcctccaacaagattgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtataggtgtgttttgggggttggtagcatcagagatccatttcctccaacaagattgc 260
Query: 61 ctcccttcaacaggactccaccagactctggtttagatcttcctttttgtttgctgagca 120
||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||
Sbjct: 261 ctcccttcaacaggactccaccagattctgg-ttagatcctcctttttgtttgctgagca 319
Query: 121 caagataagcctctggcctttccgtagctagttgaatatttgtagagtttgtagtctcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caagataagcctctggcctttccgtagctagttgaatatttgtagagtttgtagtctcag 379
Query: 181 cagctgtggaagtgtagtgggctctcatctgtttggtaccgtcatggagttcaggttgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagctgtggaagtgtagtgggctctcatctgtttggtaccgtcatggagttcaggttgat 439
Query: 241 agagcctataatggatatgagttttcagtagcaatgggactggtggcttctccaactcct 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agagcctagaatggatatgagttttcagtagcaatgggactggtggcttctccaactcct 499
Query: 301 gggaggagataaagcatacctggtttggttaatacattaaagtgggccaaagaagataag 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 500 gggaggagataaagcatacctggtttggttaatacattaaagtgggccagagaagataag 559
Query: 361 agtgaaaatcgctgggaattctgaccaggctttt 394
||||||||||||||||||||||||||||||||||
Sbjct: 560 agtgaaaatcgctgggaattctgaccaggctttt 593
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 793
Length adjustment: 9
Effective length of query: 385
Effective length of database: 784
Effective search space: 301840
Effective search space used: 301840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
