BAC Information

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BAC

Clone NameMSMg01-099E02
Chromosome14 (Build37)
Map Location 77,419,647 - 77,419,763
singlet/doubletsinglet
Overlap genenone
Upstream gene1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik, LOC100043753, LOC100043201
Downstream gene9030625A04Rik, Ccdc122, D230005D02Rik, LOC100043755, LOC676171, EG629678, Gm1587, Dnajc15, Epsti1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099E02.T7 (MSMg01no099_e02.b1)MSMg01-099E02.TJ (MSMg01no099_e02.g1)
ACCAG315234AG315235
length1,329932
length of high quality
(start - end)
---121 (135 - 255)
definitionCHROMAT_FILE: MSMg01no099_e02.b1 PHD_FILE: MSMg01no099_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:38 2005CHROMAT_FILE: MSMg01no099_e02.g1 PHD_FILE: MSMg01no099_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATTAAACACCTTCTTTTCCCCCCCNCTCAGGAGAGAAGGGTGTAGGAG
NTTCCATATTGTCACGAAGGNCCCCCCCCCNNCTTCCCNNCCCGCGGAGG
CTNACCAACAATAGTGGTGGTGACCCTATATACACTAGATCCATCCATAA
AATAAAATCCCGGCAGCGCACTCGTTTTTTTTAAACTCAGCGTTAAACGT
GCCAACCTCATTGTTCTTCTNCCTCTTCTTATTCGCCCCTAGCCGCCCCC
CCGTTCTCCCTAATACACTTCGATATCACCTTATTCTCTTCTCCCTTATC
CCCTCCCCCACGCCCCGTCTCATCGCATATGCACACTCCACAATCATGAT
AGTCACCTTTATCTTTCCGGGGCGCTTTTTTTATTCTTCCTCNTAATGAG
CCAGGATGGGTCCCTCTCGAAAACACTACTTCTTCCCCCCGTGTGAGTCC
CCCCGCTTTAATATCCCCCCCCTCTCTAAATGGAAAANCCTNCCCTNNNN
CNCCTCCNCNCCNNCCNNCCNNCNNNAAATAGTAAGAACAGAGCGGAAAA
AATGGTACACCACCCCAATGGGGANTTTAAAACACAACAAACGGCCCTGG
CGTCAAAACTCCCTTATGGACGAGGAAGTTAGATGCGCGCACAGGNCGTT
TCTCCCTCCACAACACCCCTTTCTGGGGGCGGATATATTACATTTCTCCT
TCTCACAACAAGATGGTGGAACGATGGTAAACACACATTTCGCTATTTGA
ACAACCAATACTTTTCTGTGATTTATAGACGCGGTCTTTACACAACATAT
AAGAGAGCAGCACACACAATGTGGCGGAGAGTACACATATAAGAANTCTG
TTATNACACAAACACATCAATAACAATAACCATGTTAGACTGACAAACAC
GCGGGCGTGCCTCTCTTCTCCGCGCTTGTTAATACAACCCTCTCCCCCTC
TTTCTTACTTCCTATACACGACGGGACATAACCCGACATGCGTGTGTGTG
CCCGCGATACACACTTGATTTGTTATTTATTTCACTCATACACCCGCGCG
CTCTCTCTCCCCGTCCTTGATTATTCCGCGCTCTCCCACTCACACACTAT
TACCTACTCACGTATAATCACGGGTGTGGTGCTGTTCCGAATACAACACC
ATTCTTTCGCTCACACCGCCCTTCTGCACTCTATTCGTTCATATACGTAT
CTCTCTTTATCTCTTCATCCATATACAATACCGCGCAAGCCGCGCGCTTT
CTCGCTTTTTTCTCTACTCGCCACCCGATGTCGTGCGTAGTACGNCCTCC
ACTCTTTGCCGCTATCTCTTAATANATAG
CCCCCCCCCTCTTTTTTTCCTTTCTTCCCCTTTTTCCCCCCCCCTCTTTT
TTCCCCCCCCCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCGCCAATCAGTGTGGTAAAGTTG
TTCGGCGAGCATGGATGGGCGTGACTAATTTTTAAATTTCTTACAGAGTT
CCTATTTGTGCACACAGACTATAGTTGTTGGGTTTTTTGTTTTTTGCTTT
TTTTGTTTTTTGCTTTTTTCTTGGTGATTGCCCAGCATTTTTCTCATACC
CCACCTTACCGTGCCTTTATAGTTTCTATCCCACCCCTCATGTTGCCTTT
GCCCCTCTCTTTCCCAATGATTACACCTGACCTCCCTTTATTTTCTCTGC
CGTCACCTTCCTTCCTTTGCCCATTTCCCTGCTCCTCACCCCTCCCTATA
TTTTTTCCTCCCGCCCTTTTTTGTCCCTCTCTCCCCCACCCCTTTTAACC
TCCTACCTTTTTCTTCCTTCTTTGTATAGTACCCTCCCTCCCCCCCGCCT
TTATTTTTCTCCTCTCGCTCTCACCTCCCTCTCATCTCCCTCGCCCCTGG
TCTCTCCTTTTTTATCCGCGTCTGCCCTCCACCATTTTATTATTCTCCTT
CTTATTCTCCCCTCTCCCCTCCCATCTCACTTTTTTCTTCCCCTCTTGAC
TCTCCCTCTTCTCTCTTTTCCTTCCCGCCGATCTTCTTTTTGTCTCCTTT
ACTCTCGCCCTCGCCTCCTTACCTCACTCTTGTTATATTCTTTCGCCCTC
TATTCTTTGTATCCCCCCTCTTCTTTAACCCTATACTTTTCTTTCACCTT
CTTCTTTTTTATCTCCTCTTCTTTCTTCCATCTCTCTTGCGCCTCCCACG
CTTCCCCTTCCCATCTTTTTTTCTTTCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_e02.g1 MSMg01no099_e02.g1 CHROMAT_FILE:
MSMg01no099_e02.g1 PHD_FILE: MSMg01no099_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:39 2005
         (121 letters)



>mm_chr14_77419447_77419966
          Length = 520

 Score =  190 bits (98), Expect = 3e-53
 Identities = 113/118 (95%), Gaps = 1/118 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtgtggtaaagttgttcggcgagcatggatgggcgtgactaatttttaaatttcttac 60
           ||||||||||||||||||| | ||||| |||||||| |||||||||||||||||||||||
Sbjct: 317 cagtgtggtaaagttgttccgagagcagggatgggcatgactaatttttaaatttcttac 258

                                                                     
Query: 61  agagttcctatttgtgcacacagactatagttgttgggttttttgttttttgcttttt 118
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 257 agagttcctatttgtgcacacagactatagttgttgggttttttgttttttg-ttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 520
Length adjustment: 8
Effective length of query: 113
Effective length of database: 512
Effective search space:    57856
Effective search space used:    57856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)