BAC Information

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BAC

Clone NameMSMg01-100B01
Chromosome14 (Build37)
Map Location 110,201,081 - 110,201,472
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk1, LOC640892
Downstream geneSlitrk6, EG668772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100B01.T7 (MSMg01no100_b01.b1)MSMg01-100B01.TJ (MSMg01no100_b01.g1)
ACCAG315855AG315856
length946687
length of high quality
(start - end)
---392 (59 - 450)
definitionCHROMAT_FILE: MSMg01no100_b01.b1 PHD_FILE: MSMg01no100_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:49 2005CHROMAT_FILE: MSMg01no100_b01.g1 PHD_FILE: MSMg01no100_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCCCCTCCCCTNANAAAAATTACTCATATCCCTCTCTCCACCCNNNG
GGCNNNCCNNACAAANNNNTATCTATXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCCNAGAGGATCCGTCGGAATTCTCAGGTAACCCGAAGTATCGT
TCAGGATATCATACCTGAGTGTGGTAACCCAGTACCCAAAATTACATCGA
ATGGCTCTGTACTCTACTGATAAGTCGAATATTCAGCCATATAAATACTA
GGATACACATGTCTACACGTCTCACAGACTCTAAGGTAAGCTACAACAAG
TATGGATATGCCCATAATGAGGGATCGCTTGTAATCTCATCTTACAAGGT
CTGGCATAATAATAGTCCACTACCACCGTAAATGTCATGGCAGCGCAACT
GCTATGTCCTGACAGAGACAGCCTAAGTGTAATGGTTAAGTGTTTCATGA
TTAAAGTCGGTACCCACGAACCCGCTACAGACCCGCCTAGATCGTGACAT
GAACAATTGAATGCGAATTACTTGTACCTTGTATCAATTCCTCTGAATTG
TGTACGATTTCTGTACTCTACTAAATATTACCTCATTCACTTGAGTTTTC
TCCGCTCACCCACCCCCTATAACCTTTACCTTCGCCTCCCTGAAACATCA
ACCCTGCTGTCCTTCTCTTTGACCTTCTCTAACACAATGCCATACCCTGC
ACATAAACGACCACCCTCCCTTGACGTTATTTTGACCCCGAATACCTCCT
CCCTCACCCCCCCCACCTCTAATTCTTTTTTTTCCCTCCACTTGTTTCTC
TCTTACCCCCTATTCTTCTTCCTCTGTTCCAATCCACCACACCCGCCCAA
ACCCCATCCGTATAAATCATCCTCTTAATACCTGTCTCCCATAACGCGCC
TTATTAATTTCACCCTCACTCCCCCCCCTCCTATAAATCTACTTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAAAGTTAATATCAGAGTGGTAGAAATCAAAATAAAAAACACT
GACAGTTTCATGTAACTCACTGAACATTGTTTATGGCATAGTCTTGCCCT
GTGGGAATCTAACGCATGTACAAGCATTTACCTTATTTGTTAATCACAAA
TCTGAGCAAACTATGTCCTTTCTTTAATTACTCTGTGGTCAGGTAACACA
CAATTAGGGTCAGACTGTGCTCAATAAAGGTAGAAAAGCAGTGACATTCA
GGTTATCTAATCCATTTATAACCACGAACCAAATTAAAAAGTTGCTTCGC
ATATGTAAATCAATGCTCCCAGGGTTTCAAGCTGTTCTTATGATACCCTT
AGGGGCAAGCTTATTTGTGGGCCTGACATATTTTTCTGCTTTTGCAGTTT
CAAGTAATGAACTTCTGGGTTTTGAGAATCATTAATATCTCACTATTGCA
TCCTGTCACAGGAATCTTTAAATCTCATAAAATATGTTTTACAATTTTTG
CTATTACCAAAGGAACTGGCATGGTAGAAAAATTTCATCAAAACCTAGCT
TGCTTCACTGTTTATCACAATCGACCAGAACTATAGTGTATCTAGCCCAA
TAGGGCACAATTTAATGAACAAGGGAACATTCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_b01.g1 MSMg01no100_b01.g1 CHROMAT_FILE:
MSMg01no100_b01.g1 PHD_FILE: MSMg01no100_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:49 2005
         (392 letters)



>mm_chr14_110200881_110201672
          Length = 792

 Score =  735 bits (380), Expect = 0.0
 Identities = 389/392 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagttaatatcagagtggtagaaatcaaaataaaaaacactgacagtttcatgtaactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagttaatatcagagtggtagaaatcaaaataaaaaacactgacagtttcatgtaactc 260

                                                                       
Query: 61  actgaacattgtttatggcatagtcttgccctgtgggaatctaacgcatgtacaagcatt 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgaacattgtttgtggcatagtcttgccctgtgggaatctaacgcatgtacaagcatt 320

                                                                       
Query: 121 taccttatttgttaatcacaaatctgagcaaactatgtcctttctttaattactctgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taccttatttgttaatcacaaatctgagcaaactatgtcctttctttaattactctgtgg 380

                                                                       
Query: 181 tcaggtaacacacaattagggtcagactgtgctcaataaaggtagaaaagcagtgacatt 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 tcaggtaacacacaattagggtcagactgtactcaataaaggtagaaaagcagtgacatt 440

                                                                       
Query: 241 caggttatctaatccatttataaccacgaaccaaattaaaaagttgcttcgcatatgtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 caggttatctaatccatttataaccacgaaccaaattaaaaagttgcttggcatatgtaa 500

                                                                       
Query: 301 atcaatgctcccagggtttcaagctgttcttatgatacccttaggggcaagcttatttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcaatgctcccagggtttcaagctgttcttatgatacccttaggggcaagcttatttgt 560

                                           
Query: 361 gggcctgacatatttttctgcttttgcagttt 392
           ||||||||||||||||||||||||||||||||
Sbjct: 561 gggcctgacatatttttctgcttttgcagttt 592


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)