BAC Information

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BAC

Clone NameMSMg01-100B21
Chromosome14 (Build37)
Map Location 78,938,429 - 79,088,459
singlet/doubletdoublet
Overlap geneDgkh
Upstream geneD230005D02Rik, Gm1587, Dnajc15, Epsti1, AU021034, Tnfsf11, LOC219180, Akap11
Downstream geneLOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100B21.T7 (MSMg01no100_b21.b1)MSMg01-100B21.TJ (MSMg01no100_b21.g1)
ACCAG315895AG315896
length776703
length of high quality
(start - end)
385 (101 - 485)288 (55 - 342)
definitionCHROMAT_FILE: MSMg01no100_b21.b1 PHD_FILE: MSMg01no100_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:53 2005CHROMAT_FILE: MSMg01no100_b21.g1 PHD_FILE: MSMg01no100_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,088,078 - 79,088,459)(78,938,429 - 78,938,716)
sequence
NNNNNNNNNNNNNNNTTTTTTCCCCCCCCCCTCCNNCTTNCCCCACCTCC
CNNCNCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGTCAAGGCCGAAACAACATGAAGACCCATCAGCATCTGA
CTGTTGGAAACCAGTAAGGATACATTCCTAAGTGCAGTCAGGGGAATAAA
TCACCCGTAGAACAAAGATAAGAAAGTGAGCCAGACAAATGTTAAAGTGG
ACATTTCTTGGTAGAGGCTGCCAAATCAGAACTATATCCCCAGCAAAAAA
TCTCCTGTGAATGGCCTGCAAGTTGGCTCAGGAGCTAGGACACCTGTGGA
CAGCCTGACACCCTGAGATCGGTCTGTGGGACCTACAAAGTAGAAGCAGA
GGCTACTGAAAGTTAGTGATCAGCTAACCACCATGGGACTGCTGTGGCTG
TGGCTATGGCTGTCCTCCCTCCCCCAGTCCCCAAACACACACAACCAACA
GATAAGTATAGTTACATTTCTGAAGACTGAATGAAAACTTTCAAACAGAT
AAAACCTGAGAAATCCAATGCACAGACCTTAAAGAAAAATAATACCAAGG
GTGGCTCTCCAGGCATAGGAATGTTTACTGTCCCACCTGAGATCTAGAAA
TATTGACCGGATTGTTGAACAGTATAGAGAGTCAGGCTGTGGTTAATTAC
CACTATTAGCTCTGACTTTTAAAATTAAAGGGTAATCTGGCTTTAAAGTG
AGATTCCCTGCGCCGTGTGGTTAATT
AGGAGGCGCCTGTTCGACAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCATTTTGTCAAGCTTGCCCTGGCAGAGTAAGCCGGAGAGGGAAATG
AACTTTTCTGAAAGACTCAAGAGTCAGCGGGCTGAGCAGGCCAAGTGAAA
TCGGACCTCACACACCAACTGAGAGACTGTGACTGTGAGCCAGATACCAG
GAATGCTTTCCTCAGAAATGCTGGCCTCAGGGTGTGAAAACGGAAGTAGC
GCCACCTGCTCAGCCCCATGGTCCCTTCCTCTGGAGCCACTGTGAATCTA
TGTTACATCCACAACAGTGCCATGAGCCTGATCAAAACAAGACATACATC
TGAAAGTTAACACCTTACTTTTAATAAGATTTAAGGTTACTTCTCCACCA
AGGGAAAAATGTGTTAGAAGTATTATTTTAACAAGGCCTTTAAAAAAAAT
TTCCCCACTCCTTCAAATAAGGTTATTTTAAAGGCTAGTTTGGAGTGCTT
TCTGGAATCTGCAGCCCTCATAATGATTAATACAACCAGCTGCTTGGCCA
TGCTAATTTAGACACACTGAGGCCTCAGCTCTACCTTTCCAACCCATTTA
CAGGATCTTAAATCATCCGAACTCACTCTAGCCACTTAAGCGATTGCGGT
CCCCGTGCTAGCCTTTTCCCCTCGCTCTCACCTCCTTTGTGTATATCTGT
CAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_b21.b1 MSMg01no100_b21.b1 CHROMAT_FILE:
MSMg01no100_b21.b1 PHD_FILE: MSMg01no100_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:53 2005
         (385 letters)



>mm_chr14_79088048_79088832
          Length = 785

 Score =  669 bits (346), Expect = 0.0
 Identities = 373/382 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtcaaggccgaaacaacatgaagacccatcagcatctgactgttggaaacca 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ggaattcagtcaaggaggaaacaacatgaagacccatcagcatctgactgttggaaacca 353

                                                                       
Query: 64  gtaaggatacattcctaagtgcagtcaggggaataaatcacccgtagaacaaagataaga 123
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 352 gtaaggatacattcctaagtgcagccaggggaataaatcacccgtagaacaaagataaga 293

                                                                       
Query: 124 aagtgagccagacaaatgttaaagtggacatttcttggtagaggctgccaaatcagaact 183
           |||| ||||||||||||||||| |||||||||| |||||||||||||||||||||| |||
Sbjct: 292 aagtaagccagacaaatgttaaggtggacatttgttggtagaggctgccaaatcaggact 233

                                                                       
Query: 184 atatccccagcaaaaaatctcctgtgaatggcctgcaagttggctcaggagctaggacac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 atatccccagcaaaaaatctcctgtgaatggcctgcaagttggctcaggagctaggacac 173

                                                                       
Query: 244 ctgtggacagcctgacaccctgagatcggtctgtgggacctacaaagtagaagcagaggc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 ctgtggacagcctgacaccctgagatcggtctgtgggacctacaaagtagaagcagaggc 113

                                                                       
Query: 304 tactgaaagttagtgatcagctaaccaccatgggactgctgtggctgtggctatggctgt 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 112 tactgaaagttagtgatcagctaaccaccatgggactgctgtggctgtggctatggctat 53

                                 
Query: 364 cctccctcccccagtccccaaa 385
           || |||||||||||||||||||
Sbjct: 52  cccccctcccccagtccccaaa 31


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no100_b21.g1 MSMg01no100_b21.g1 CHROMAT_FILE:
MSMg01no100_b21.g1 PHD_FILE: MSMg01no100_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:53 2005
         (288 letters)



>mm_chr14_78938229_78938916
          Length = 688

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattttgtcaagcttgccctggcagagtaagccggagagggaaatgaacttttctgaaag 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 cattttgtcaagcttgccctggcagagtaagctggagagggaaatgaacttttctgaaag 260

                                                                       
Query: 61  actcaagagtcagcgggctgagcaggccaagtgaaatcggacctcacacaccaactgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcaagagtcagcgggctgagcaggccaagtgaaatcggacctcacacaccaactgaga 320

                                                                       
Query: 121 gactgtgactgtgagccagataccaggaatgctttcctcagaaatgctggcctcagggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactgtgactgtgagccagataccaggaatgctttcctcagaaatgctggcctcagggtg 380

                                                                       
Query: 181 tgaaaacggaagtagcgccacctgctcagccccatggtcccttcctctggagccactgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaaacggaagtagcgccacctgctcagccccatggtcccttcctctggagccactgtg 440

                                                           
Query: 241 aatctatgttacatccacaacagtgccatgagcctgatcaaaacaaga 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatctatgttacatccacaacagtgccatgagcctgatcaaaacaaga 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)