BAC Information

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BAC

Clone NameMSMg01-100F13
Chromosome14 (Build37)
Map Location 105,789,228 - 105,789,629
singlet/doubletsinglet
Overlap genenone
Upstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420, Rbm26, LOC621103, LOC100043466, Ndfip2
Downstream geneLOC620376, LOC100043469, Spry2, EG621364, LOC212084, Trim52, LOC100043807, LOC100043476
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100F13.T7 (MSMg01no100_f13.b1)MSMg01-100F13.TJ (MSMg01no100_f13.g1)
ACCAG316070AG316071
length705698
length of high quality
(start - end)
401 (55 - 455)282 (55 - 336)
definitionCHROMAT_FILE: MSMg01no100_f13.b1 PHD_FILE: MSMg01no100_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:11 2005CHROMAT_FILE: MSMg01no100_f13.g1 PHD_FILE: MSMg01no100_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAGGA
CCCTCTCTCTCTGCTGTTCCTCTGCTTCTCCATCCTTGTCTCTGTAAGAG
ACAATTGGCCCGTCTGTGCCCAAAGGCTCAGGTTTTCCTCTCTTCAGCCA
TCTCAGCACAGTACCTCCTGACATCTTCAGCCCTACCTTCCTACTCTTGT
CTTCCCCAAGGGCAGCAACAGGTTCCTGATTGCTCAGTAAGTCTTGTTCT
CATACTTAAACAATGTGTTTTCACTCCTAATGTCTCTCTCTTCAAAAGAA
ATACATTTCTCTCATGGAGCCTGCGTTTTTCCCAGTTTAGCAAGATGAGG
TAGGCACACACATTAAAGATTTGATTCATTATTTCTCTACCAAGTGATTC
TTATGTGTAGCTGTATTTCTACTACATAAAGGAAACACCCCAAATTTGTC
TCCTGCATCGCAAGTGTGTGCGCCCTCTTAGCATCTTCTTTCGAGAATAG
AAAGTTAATCTTGGCTTTTTACTCCCCAGACCTCATTAATTTTATACTAT
TAGCCCCTTTATAGAAACTTTCCTCTAGAAATGGATATTTCCCATCAAGT
TGCTCCCCCTTACCTAGGTCCCCTCAGAAACATGACCCACGCTCCTGGGC
TTCCACTCACAGGGAACGGTGCTTTCCCCATTTCCTTTCATTGCTGACCC
CTCGC
GGGCGGCGCCTGTCCAAAGATGTAGGTGACCTATAGAATTTCCAGAGGAA
TTCAGTACTGCCCCTGGTATTACACTATCTCTTTGAGTAAAAGTTAGGTC
ACTGCCCTTCACAGGAATTTACCATCACTAAGGAAGAAAGTTTCTGACCG
TAGGAGAAACCAGAATAGATATTTAGAATTATAGCTGAGTTACACCTATA
TACAGGAATTTACAATGGTTTAGGAAGTACATCCGGCTGTGGTTTTAGAG
TATTGCATTATTCATGAGATGGTTAGCTAGAACAGAACTCCCTATTGATT
TTTTGACTTGGGTGTGAAAGCCCTTGCCCTAGGAGTGAAAAGCTCTCACA
CCTGGCTTCTAAGACTATAGCTGACCTTAGATAGGGCTGACTCTGTCTCA
GTTATTTTATTGCCCAGTTCCTGCCAGTCTTTGCGTTTTCATTCCTCTGT
TCTGCGTAAGAGTCATTAAGCATCCGGTTACCTCATTTGTACCTTGCGGC
TATGTCACCCACCTACCTTGTTGTCTTCTGCATAAAAAGTCCGATGTTCA
ATCTTGAGAAATTACCATTCAGATTCCAGACTAACTCTCCTGTGTGTGTG
TCTGACTGCCATTCATTCAAGCATTGGCCCGCCCGTGTCCCCTAGACCCC
GCTCCCCGCATACCCAGGGACCCATATAGTTAGTCCGGTTATCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_f13.b1 MSMg01no100_f13.b1 CHROMAT_FILE:
MSMg01no100_f13.b1 PHD_FILE: MSMg01no100_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:11 2005
         (401 letters)



>mm_chr14_105789028_105789829
          Length = 802

 Score =  739 bits (382), Expect = 0.0
 Identities = 397/402 (98%), Gaps = 1/402 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctctctgctgttcctctgcttctccatccttgtctctgtaagagacaattggccc-gt 59
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |
Sbjct: 602 ctctctctgctgttcctctgcttctccacccttgtctctgtaagagacaattggcccatt 543

                                                                       
Query: 60  ctgtgcccaaaggctcaggttttcctctcttcagccatctcagcacagtacctcctgaca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ctgtgcccaaaggctcaggttttcctctcttcagccatctcagcacagtacctcctgaca 483

                                                                       
Query: 120 tcttcagccctaccttcctactcttgtcttccccaagggcagcaacaggttcctgattgc 179
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tcttcagccctaccctcctactcttgtcttccccaagggcagcaacaggttcctgattgc 423

                                                                       
Query: 180 tcagtaagtcttgttctcatacttaaacaatgtgttttcactcctaatgtctctctcttc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tcagtaagtcttgttctcatacttaaacaatgtgttttcactcctaatgtctctctcttc 363

                                                                       
Query: 240 aaaagaaatacatttctctcatggagcctgcgtttttcccagtttagcaagatgaggtag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aaaagaaatacatttctctcatggagcctgcgtttttcccagtttagcaagatgaggtag 303

                                                                       
Query: 300 gcacacacattaaagatttgattcattatttctctaccaagtgattcttatgtgtagctg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gcacacacattaaagatttgattcattatttctctaccaagtgattcttatgtgtagctg 243

                                                     
Query: 360 tatttctactacataaaggaaacaccccaaatttgtctcctg 401
           ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 242 tatttatactacataaaggaaacaccccaaatttgtctcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 802
Length adjustment: 9
Effective length of query: 392
Effective length of database: 793
Effective search space:   310856
Effective search space used:   310856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)