BAC Information

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BAC

Clone NameMSMg01-100M12
Chromosome14 (Build37)
Map Location 102,033,867 - 102,034,146
singlet/doubletsinglet
Overlap geneCommd6
Upstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4
Downstream geneUchl3, Lmo7, LOC100043795, LOC545567, LOC669278
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100M12.T7 (MSMg01no100_m12.b1)MSMg01-100M12.TJ (MSMg01no100_m12.g1)
ACCAG316379AG316380
length782775
length of high quality
(start - end)
31 (393 - 423)281 (136 - 416)
definitionCHROMAT_FILE: MSMg01no100_m12.b1 PHD_FILE: MSMg01no100_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:46 2005CHROMAT_FILE: MSMg01no100_m12.g1 PHD_FILE: MSMg01no100_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTCCCCCCCCCCCCCNCNTNCCCCTTTTNCCCTCTCTCCCTCTCATCC
CCCCCCCATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTCCACCAGG
ACCCGCGGAATCAAGGTCCTTACCTAAACATAATAGAAGCAATCTACAGC
AAACCACTAGCCAACATCAAAGTACATGGAGAGAAGCTGGAAGCAATCCC
ACTAAAATCAGGGACTAGACCAGGGTGCCGAGTTTCTCCCTACATTTTCA
ACATACTACTCGAACGTATCAGCCAGAGCAATTCGACAACAAAAGGAGAT
CAAGGGGATACCAATTGCAAAAGAGGAAGTCAAAACATCACTTTTTGCAG
ATCATATGACAGTACATACAAGTGACCCTATCTATTCCACCAGAGAACTC
CTAAACCTGACAAACAGCTTTGGTGACCCACCTGGATACAAAATTAACTC
AAACAAGCCAACGGCCTTTCTCTACCCAAAGAATAACAAGGCTGAGACAG
ACATTAGGGAAACAACACCGCTCCTCATAGTCACAAATAATATAAAATAT
CTCGGCGTGACTCTACCCAACGAACCACAAGATCTGTATGATACACACCT
TCCCGTCTCTGAACAAACAAATTAATGAACATCCCTGAACCAGCAAACAC
TCTCCCCTGCTCACGGATTGCCAGGACCCAACCTCGCCCAAATGGCTATC
TTTGCCCCCGCCACCCCCCGACTTCCACGCACCCCCCCCTCACACTTCCA
CCCCCCACTTCCTCCACCAATTTAAAAAGGAG
TTTTTTTTTTTNNTTTTNNNTTTTTTTTTTTCCCCCCNTCCCCNCCCCGC
TTCNCNNTACTATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTCCTTAATATA
ACTGAGATCATGTAGTGTCTGTCTTGCTGTGTCCGGTTGGTCTTCAGCAT
AGCGAGCTCTGGGCTCACCTGGGTAGGAAATGAGAGGGTTTCCTCTGTCA
TAGCTGAGTGATGCCATTGTGTGTATATGCCCATGCCTCCAACGTGGCAA
GTAGCAGATGTGTGTGGATGTTACCCGTGACTACTGTGCTCCCCGTAAGG
GATCTGGACATTTGTAGATTTTGCTCTTCATTATCTTCTTACTTCTGAGC
CAGTGCCCCATGGACACTGATACTCCTGCAGGACCATGGCCATGTGTAAT
GTGTTCTTCAGGAGACAGGTCTTCCTGCTTGTTTTTTAGACATGGTCATC
TGGGGTTTGTCTCAAATTCTGACCCCTCTTGTCTAGTAATGTTTGTTTTT
CAGTGATCTTTACCAAGACTGTAGCATTAAAATACGGACAGTGTATATCT
GTATAGATATAATTAAAGGAACTTCCTAAATATCCTTTTAAAAGTAAAAT
TAATATTTTCTCCTTTCTCTCCAGAATTTCTACTAACTGTTCAAAGAAAT
TGCCCCTGCAATTGATATCGTGTGACATCTGATTCTCTATTCCTATGTAA
TGGAACCCCCCCTCCAAATGATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_m12.g1 MSMg01no100_m12.g1 CHROMAT_FILE:
MSMg01no100_m12.g1 PHD_FILE: MSMg01no100_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:46 2005
         (281 letters)



>mm_chr14_102033521_102034200
          Length = 680

 Score =  520 bits (269), Expect = e-152
 Identities = 278/281 (98%), Gaps = 1/281 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtccttaatataactgagatcatgtagtgtctgtcttgctgtgtccggttggtcttc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 626 agtgtccttaatataactgagatcatgtagtgtctgtcttgctgtgtctggttggtcttc 567

                                                                       
Query: 61  agcatagcgagctctgggctcacctgggtaggaaatgagagggtttcctctgtcatagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agcatagcgagctctgggctcacctgggtaggaaatgagagggtttcctctgtcatagct 507

                                                                       
Query: 121 gagtgatgccattgtgtgtatatgcccatgcctccaacgtggcaagtagcagatgtgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 506 gagtgatgccattgtgtgtatatgcccatgcctccaacgtggcaagtagcacatgtgtgt 447

                                                                       
Query: 181 ggatgttacccgtgactactgtgctccccgtaagggatctggacatttgtagattttgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggatgttacccgtgactactgtgctccccgtaagggatctggacatttgtagattttgct 387

                                                    
Query: 241 cttcattatcttcttacttctgagccagtgccccatggaca 281
           |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 386 cttcatta-cttcttacttctgagccagtgccccatggaca 347


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 680
Length adjustment: 9
Effective length of query: 272
Effective length of database: 671
Effective search space:   182512
Effective search space used:   182512
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)