BAC Information

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BAC

Clone NameMSMg01-101D22
Chromosome14 (Build37)
Map Location 100,001,638 - 100,001,816
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671
Downstream geneLOC668672, EG546623, Klf12, LOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101D22.T7 (MSMg01no101_d22.b1)MSMg01-101D22.TJ (MSMg01no101_d22.g1)
ACCAG316707AG316708
length742745
length of high quality
(start - end)
179 (75 - 253)249 (75 - 323)
definitionCHROMAT_FILE: MSMg01no101_d22.b1 PHD_FILE: MSMg01no101_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:23 2005CHROMAT_FILE: MSMg01no101_d22.g1 PHD_FILE: MSMg01no101_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGGACCCGCNCGGATTC
TTGCTACCACTTACANTGACCAGCTGTTTATGAAGGACTTTTTTTTCCCT
AAAGAAAAAAGGAAGATGGAAGGTTGCTACTGTCATTTGCTGTCTCAGTG
TGACTGTTGTGGATTCATTGGCCTATTTTTTTTTTTTTTCATTTGAGTCC
TGTAGATCAAGAGAGTAGTAGACTGTGCTGGGTAAGGGGCGGGGGTGGGA
GTAATATTAAATGGGGAGTTAGGCAGGAGCCTCCCTAAACTGCCCTGCAG
ACATAGGTCAGAGTTAGAATTTAGATGNCTTAAGAACACGTCTCCAGATT
TACCCCCTTGTTTTTTTTCCCCCCCATCCCCCCGTCCTACACTATCAGGA
AAATAGGCAATTGTAGCACGCCAACTCTAAAGTCACCTTATTTTCGATCA
CTCAGAAAAACTCATTGAGGTACAAATCACCAAGCCTGCCCCTGAGTTTT
CTCTCAGTCACATACCTCAAAGGCAAGAAACATGATAATAGGTCTGCTCT
GTGTCTATGCGCTGGCATCTGACCCTGTAGCTATGTGGAGCACGCATTCA
CCCTTTTTTACTTTTTGGGATCACCATGCCCTGTGCAATCCTCGGCTTCA
TCTCAATGTCTCATGAATTTTTTTTTTTTTTTTTACCCTGCTCTACAATT
TACACTCTACATGCCTCGTCCCATACTCCCCATCCTCCTCCT
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTTCGAATTCTGTAGATTGTATCTTGGGTATTCTGCACT
TTTTTTCTGGCTAATTATCACTTATCAGTGAGTACATACCATGTATGTTC
TTTTGGTTCTGAGTTACCTCACTTAGGATGATATTCTCTAGTTCCATCCA
TTTGCCTTCAGAACTTAGGATGTCCTTGTTCTTAATAGCTGAGTAGTATT
CCATTGTGTAAATGAACCACATTTTATATATTCATTCTTCTGTCGTGGGA
CATCTGGGTTGTTTCCAGCTTCTGGTTTTCACAAACAAGGCTGCTATGAA
CAGAAAATGAGGAATAGTCTTGAACTGATCGGCACAGGGGAAAATTTTCT
AAACAGAACCACAATGGCTCACACTCTAATATCAAGAATTGATAAATGGG
ACCTCATGAAACTGAAAAGTTTCTATAAGGCAAAAGACATAGTCCATAAG
ACAAACCAGCATCCTATAAATTGGGAAAAAAAATCTTTAGTAACCCCACA
TGAAATAGAGGGCTAATATCCAAAATATATAAAGAAGTGAGAAGCTTAAC
CTCCTAAAATCAAACAACTCTATCCAAAACATGGGGTAGAGAATTCCCCA
TCGAAGGAATTCTCTTATGGCTTGAAAAACACCTTAAGAAAATGTTTAAC
GGTCTTTAGCGATCCATATAAACGGCATTCAAATGACCCTTGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_d22.b1 MSMg01no101_d22.b1 CHROMAT_FILE:
MSMg01no101_d22.b1 PHD_FILE: MSMg01no101_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:23 2005
         (179 letters)



>mm_chr14_100001438_100002016
          Length = 579

 Score =  346 bits (179), Expect = e-100
 Identities = 179/179 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtttatgaaggacttttttttccctaaagaaaaaaggaagatggaaggttgctactgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtttatgaaggacttttttttccctaaagaaaaaaggaagatggaaggttgctactgtc 260

                                                                       
Query: 61  atttgctgtctcagtgtgactgttgtggattcattggcctattttttttttttttcattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttgctgtctcagtgtgactgttgtggattcattggcctattttttttttttttcattt 320

                                                                      
Query: 121 gagtcctgtagatcaagagagtagtagactgtgctgggtaaggggcgggggtgggagta 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtcctgtagatcaagagagtagtagactgtgctgggtaaggggcgggggtgggagta 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)