BAC Information

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BAC

Clone NameMSMg01-101F12
Chromosome14 (Build37)
Map Location 11,123,538 - 11,123,757
singlet/doubletsinglet
Overlap geneFhit
Upstream geneLOC100042415
Downstream geneLOC100041974, LOC667030, EG382843, LOC100042427
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101F12.T7 (MSMg01no101_f12.b1)MSMg01-101F12.TJ (MSMg01no101_f12.g1)
ACCAG316781AG316782
length718716
length of high quality
(start - end)
59 (255 - 313)222 (71 - 292)
definitionCHROMAT_FILE: MSMg01no101_f12.b1 PHD_FILE: MSMg01no101_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:31 2005CHROMAT_FILE: MSMg01no101_f12.g1 PHD_FILE: MSMg01no101_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATAATTTGCGGCGCTAAACGACTCCTATTTCGTCACCGCCGCGGAAN
NCNNAACTTTTCGCCACCGCGGACNACNCNGCNGACNCAAANCAGGNNGC
NGAAGGNNGAAGGGGCCCCNCGAGNGNAACCGCGNCAANNCCTCCAAGCC
CCNAACCACAACCCAAGAAAAACCCCAGNANCAGAGNCCCGGGGNCGAAN
CCACTGGCACCAGAGAGAGAANACGAAAGACCCGGAGCNCGGCCACTATT
CTACCTCGTGTTGTTACATCAAGGTGTTGTGCTCTGTTCATGATTCTTGG
GTGCACACCGAATTTTTTTTTTAGCGGGGGGGCCCCCCACAAGGGGCCCG
CAAGTTTTTCTCGCCCCCCCCCCCCCTGAGGACAGCCCACAGCACTTTTG
TCGCTTCCTCTATATAACACACAAACATTCATTGCCTTCCTGCTTCTGCC
GACTGATGTCTGGCTTGGATTCAAAAGTCCTGCTAATTCCTCCTCTACTA
CGTACGTATTGGGTAAAGCTATTGCATCATACAATGACACAGTGACCCTA
CCGAAGCCATATTGCTGTGGTCACCCATTGATACAGGGAATGATCACCTT
GTATCCATTCCAAGGCTCCCAAACTTTCTAACCTGCCAGGGCAAAAACTC
CCCATTTTTCTTTTTTTATTTTAGAGAACAGAATTTTCCTCCAACATAAC
AAATGCGCCATTGGTTCA
CCGATGATAGGAGAGCCTGGCGGCGCCTGGTTCAAAAGTGAGGTGAACTA
TAGAAGTTTCCTGAAATTCCTAAGGGAAAGAGAATGCTGTTATATGTGTG
CTTGTGCTTACTTACACACAACTATTTATGTTTCTGTATGTATGTTGCCC
TTGACCCTTTTTCTTGACTCAGAAGTTTCAGAAGTCTTCTTAGATTCAGT
CCACATACATTTGAAGGGCTTTTTAAAAGGTGGAGTCACTTGCCTATCTT
CACATGTACACTGGTGTGTAGGAGGCAACCCCTGCAGCTGCAGAAACAGT
GACAATCTCTCAGTTTTTTTTATTATTAGGCTTCCTCAACATAAATGTCT
TTAAAGTCAATCCCTCCCATGCCCAGGGGTAAGTAGCTAAATAAAATAGG
AGGAGATTTATGTCAGTCATGTGATTTTTAATAATAATCACTTATTTTAC
TAGTAACAAGATTGCTTGGTGTATTGCAAACATATTGATGTATATACCTT
ACCAAGAAAACGAAGGATGGTTCTAAAGGAAGGAAGGGAGGTAGGAATAG
AGGCAGCGACTTCCCTTCCTTTTTTACAGCATTTCTTCCACCCTCATCCT
TTATCCTTCTGTCTATACTCTTCTCCCGTACTGTGCTTTTATACTGTTTC
GATCTGTTCTTTTTCTTCACACTCACTCTTCACCCTATAGTTCACACTCT
CCACTCCCCTGACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_f12.g1 MSMg01no101_f12.g1 CHROMAT_FILE:
MSMg01no101_f12.g1 PHD_FILE: MSMg01no101_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:31 2005
         (222 letters)



>mm_chr14_11123338_11123961
          Length = 624

 Score =  387 bits (200), Expect = e-112
 Identities = 215/220 (97%), Gaps = 2/220 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagggaaagag-aatgctgttatatgtgtgcttgtgcttacttacacacaactatttat 59
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 420 taagggaaagagaaatgctgttatatgtgtgcttgtgcttacttacacacaactatttgt 361

                                                                       
Query: 60  gtttctgtatgtatgttgcccttgaccc-tttttcttgactcagaagtttcagaagtctt 118
           ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 360 gtttctgtatgtatgctgcccttgacccttttttcttgactcagaagtttcagaagtctt 301

                                                                       
Query: 119 cttagattcagtccacatacatttgaagggctttttaaaaggtggagtcacttgcctatc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cttagattcagtccacatacatttgaagggctttttaaaaggtggagtcacttgcctatc 241

                                                   
Query: 179 ttcacatgtacactggtgtgtaggaggcaacccctgcagc 218
           ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 240 ttcacatgtacactggtgtgtaggaggcagcccctgcagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 624
Length adjustment: 9
Effective length of query: 213
Effective length of database: 615
Effective search space:   130995
Effective search space used:   130995
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)