BAC Information

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BAC

Clone NameMSMg01-101O17
Chromosome14 (Build37)
Map Location 65,273,519 - 65,356,538
singlet/doubletdoublet
Overlap geneKif13b
Upstream geneXkr6, LOC668306, 2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra
Downstream geneHmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101O17.T7 (MSMg01no101_o17.b1)MSMg01-101O17.TJ (MSMg01no101_o17.g1)
ACCAG317204AG317205
length706704
length of high quality
(start - end)
638 (66 - 703)554 (54 - 607)
definitionCHROMAT_FILE: MSMg01no101_o17.b1 PHD_FILE: MSMg01no101_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:19 2005CHROMAT_FILE: MSMg01no101_o17.g1 PHD_FILE: MSMg01no101_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,355,901 - 65,356,538)(65,273,519 - 65,274,086)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTAATTACCAACATAGCTCAGTAGTGGGGTGCTTGCTTAGCATGCATGG
GGTCTCAAGTTCAATCTCCACCACCACCTTAGTCCCATAGCCAATCGCCC
CCAACACAAACCTGCGCAATCTCCTCAGTTTTCCTTAGTTTCTCCTCCCA
GGTCACAGTCATTTCCTGGATGAGTTTCTCCGATTCTTCCAGACGATCTT
TCAGCTCTGGAGATTTCATTGCCTAAAAACAAAGTGTCACCTCATGGCAT
AACTGCTCAGTGTCGGGAAAGAACAATCAGCTGGATTGGAAAGGGCGGGG
ACTGTCACCTGTCACTGAGCCCTCCACCACTCCAGCAAGGTGGCAGTCCT
CAAGGTCCATAGAGCCTGTGCTGGGGGACTACAGACCTACCAAAGCAACT
AGGGCACATCCAGAAAGACAACTTTCCTCCAACCTACTGTGAAGATCCCA
TTACATTTAAGAAGCTACACGTTCCAAGCTACTTGTAAAGAACTAATGAT
TTTAATTTTAGTAGGTTGTACACCTAGACTCAAAAGCATGCTGCATCTCA
ATCTCTGTCTAATGTTGATTTCAAGAATTTACTCAAAGCTATGTAAGTTA
GATGTGAACATGTTGCAAACTGGACAGTGTTTAATACACTTGGTCTTAAG
ACAGAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCTATGAAAAGGGNTAACAAAATTGAGCTCCTTTTTGCTGAGTTTGAA
AAGAATTCTATTTAAGCATTGCTTCTGGGGAATGTAGTGTTTTAAGGGAT
AGCATGTGGCTGTCAAGTAGTTGGGTCTAGTCCTGAGTGCTCCTGACTCA
GTGTGTATGTGCGGGAAGTGTCCTGAGGATTGACATGGAGACAGGCTGAG
ACTGGGTCACTGGGTTGTAACTCTGTTGTTTGAGTGACATTTGTGTCTTT
TGAGGGAAGTCCAAAGGTTTCCAGAACTCTTCAGGGTAGGGTTCGATTCT
TGTGTGACTCAGTGGCTGGTTGTGCTTAAGGGGGTTCAGTTTTTCTGCTT
AACTGTCTGTGGGGTTGGGAAAATTAATTGAATATTAATTGGTAGTTCCT
AATTTAATGATAACTAGAGTTGTAGTGGCTAATTTGTCAAGATAAAGAAC
GGAAGTGTGTGTGTGTCTATGTGTTTGTGTGTCGTCTGTCTCTCTGTCGA
TGTCTGTAATCTTAAAACTTGTTGGAGGCAGAAGGATCTCTGAGGTGAGT
CTGGGCTGTGTACATAGTAAAGTTGCTTTTTTAAAAAATTAAAAAATTCT
CTAACATCCTTGTCTGCTAACCAACTAACCTTCCTTCCTCCCGGTCTCTA
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_o17.b1 MSMg01no101_o17.b1 CHROMAT_FILE:
MSMg01no101_o17.b1 PHD_FILE: MSMg01no101_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:19 2005
         (638 letters)



>mm_chr14_65355638_65356675
          Length = 1038

 Score = 1197 bits (619), Expect = 0.0
 Identities = 634/639 (99%), Gaps = 2/639 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctcagtagtggggtgcttgcttagcatgcatggggtctcaagttcaatctccaccacc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 901 agctcagtagtggggtgcttgcttagcatgcatggggtctcaaattcaatctccaccacc 842

                                                                       
Query: 61  accttagtcccatagccaatcgcccccaacacaaacctgcgcaatctcctcagttttcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 accttagtcccatagccaatcgcccccaacacaaacctgcgcaatctcctcagttttcct 782

                                                                       
Query: 121 tagtttctcctcccaggtcacagtcatttcctggatgagtttctccgattcttccagacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tagtttctcctcccaggtcacagtcatttcctggatgagtttctccgattcttccagacg 722

                                                                       
Query: 181 atctttcagctctggagatttcattgcctaaaaacaaagtgtcacctcatggcataactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 atctttcagctctggagatttcattgcctaaaaacaaagtgtcacctcatggcataactg 662

                                                                       
Query: 241 ctcagtgtcgggaaagaacaatcagctggattggaaagggcggggactgtcacctgtcac 300
           ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 661 ctcagtgccgggaaagaacaatcagctggatgggaaagggcggggactgtcacctgtcac 602

                                                                       
Query: 301 tgagccctccaccactccagcaaggtggcagtcctcaaggtccatagagcctgtgctggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tgagccctccaccactccagcaaggtggcagtcctcaaggtccatagagcctgtgctggg 542

                                                                       
Query: 361 ggactacagacctaccaaagcaactagggcacatccagaaagacaactttcctccaacct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggactacagacctaccaaagcaactagggcacatccagaaagacaactttcctccaacct 482

                                                                       
Query: 421 actgtgaagatcccattacatttaagaagctacacgttccaagctacttgtaaagaacta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 actgtgaagatcccattacatttaagaagctacacgttccaagctacttgtaaagaacta 422

                                                                       
Query: 481 atgattttaattttagtaggttgtacacctagactcaaaagcatgctgcatctcaatctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atgattttaattttagtaggttgtacacctagactcaaaagcatgctgcatctcaatctc 362

                                                                       
Query: 541 tgtctaatgttgatttcaagaatttactcaaagctatgtaagttagatgtgaacatgttg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgtctaatgttgatttcaagaatttactcaaagctatgtaagttagatgtgaacatgttg 302

                                                  
Query: 601 caaactggacagtgtttaat-acacttggtcttaagaca 638
           |||||||||||||| ||||| ||||||||||||||||||
Sbjct: 301 caaactggacagtg-ttaataacacttggtcttaagaca 264


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no101_o17.g1 MSMg01no101_o17.g1 CHROMAT_FILE:
MSMg01no101_o17.g1 PHD_FILE: MSMg01no101_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:20 2005
         (554 letters)



>mm_chr14_65273333_65274286
          Length = 954

 Score = 1007 bits (521), Expect = 0.0
 Identities = 550/568 (96%), Gaps = 14/568 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatgaaaagggn-taacaaaattgagctcctttttgctgagtttgaaaagaattctatt 59
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ctatgaaaagggagtaacaaaattgagctcctttttgctgagtttgaaaagaattctatt 246

                                                                       
Query: 60  taagcattgcttctggggaatgtagtgttttaagggatagcatgtggctgtcaagtagtt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 taagcattgcttctggggaatgtagtgttttaagggatagcatgtggctgtcaagtagtt 306

                                                                       
Query: 120 gggtctagtcctgagtgctcctgactcagtgtgtatgtgcgggaagtgtcctgaggattg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gggtctagtcctgagtgctcctgactcagtgtgtatgtgcgggaagtgtcctgaggattg 366

                                                                       
Query: 180 acatggagacaggctgagactgggtcactgggttgta-------------actctgttgt 226
           |||||||||||||||||||||||||||||||||||||             ||||||||||
Sbjct: 367 acatggagacaggctgagactgggtcactgggttgtatttctgatcatagactctgttgt 426

                                                                       
Query: 227 ttgagtgacatttgtgtcttttgagggaagtccaaaggtttccagaactcttcagggtag 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttgagtgacatttgtgtcttttgagggaagtccaaaggtttccagaactcttcagggtag 486

                                                                       
Query: 287 ggttcgattcttgtgtgactcagtggctggttgtgcttaagggggttcagtttttctgct 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ggttcgattcttgtgtgactcagtggctggttgtgcttaagggggttcagtttttctgct 546

                                                                       
Query: 347 taactgtctgtggggttgggaaaattaattgaatattaattggtagttcctaatttaatg 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 taactgtctgtggggttgggaaaattaattgaatattaattggtagttcctaatttaatg 606

                                                                       
Query: 407 ataactagagttgtagtggctaatttgtcaagataaagaacggaagtgtgtgtgtgtcta 466
           ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 607 ataactagagttgtagtggttaatttgtcaagataaagaaaggaagtgtgtgtgtgtcta 666

                                                                       
Query: 467 tgtgtttgtgtgtcgtctgtctctctgtcgatgtctgtaatcttaaaacttgttggaggc 526
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 667 tgtgtttgtgtgtcgtctgtctctctgtcgatgtctgtaatcttaaaacttggtggaggc 726

                                       
Query: 527 agaaggatctctgaggtgagtctgggct 554
           ||||||||||||||||||||||||||||
Sbjct: 727 agaaggatctctgaggtgagtctgggct 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)