BAC Information

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BAC

Clone NameMSMg01-103G19
Chromosome14 (Build37)
Map Location 22,802,710 - 22,802,980
singlet/doubletsinglet
Overlap genenone
Upstream geneVcl, Ap3m1, Adk, Myst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1
Downstream geneZfp503, 1700112E06Rik, EG665075, EG435392, LOC665068
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103G19.T7 (MSMg01no103_g19.b1)MSMg01-103G19.TJ (MSMg01no103_g19.g1)
ACCAG318295AG318296
length723735
length of high quality
(start - end)
503 (70 - 572)273 (67 - 339)
definitionCHROMAT_FILE: MSMg01no103_g19.b1 PHD_FILE: MSMg01no103_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:21 2005CHROMAT_FILE: MSMg01no103_g19.g1 PHD_FILE: MSMg01no103_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAA
TTCTTTGTTCAGTTCTCAGCCCCATTTTTTAATGGGGTTATTTGATTTTC
TGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTCAGTGTCTCTGGCTTTATGTGAAGTTCCTTGATCCA
CTTAGATTTGACCTTAGCACCAGGAGATAAGTATGGATCGATTCGCATTC
TTCTACATGATAACAACCAGTTGTGCCAGTACCAATTGTTGAAAATGCTG
TCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACC
ATAGGTGTGTGGGTTCATTTCTGGTTCTTCAATTCTATTCCATTGGTCTA
CTTGTCTGTCTCTATACCAGCACCATGCTGTTTTTATTCATAATTGCTCT
GCATTACAGTTTTATGTCAGGCATGGCGATTCCTCTAGAGGTTCCTTTTA
TCCTTGACACAAGTTTTTGCTAC
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAATGTGGAAAGATAGTAGCCTTAGCTAATTGCT
CATTTCGTTTTTATTTAAATCTCTGGGAAGCTGCTGTGTGAAAAGTGAAA
GCAGAGAAAATAGAAGCTTTGGCTTTTGTTAAATTTCCATTTTAAGGGTT
GGGGGGCGTTTGAGTTTCGTTTTGTGCAAAGAGTAGAGCAGGCTGGGACT
CGCCCGGCTGAGCCAGAGGCCCCCCCCCCTACCCCCGGGACGCTCGACTG
CCTAGCCGTTCCCCTGTTCGCAGNTCAAGCATCCCCGGCCTGGGGTAGAC
AGCCGGTACAGACTAGCAGGTATGGTAGGACATTTGCTGAGCTGCAGAGA
GTCGGTAGGACCTTCTTGTCCTTCGTTAACATAGCGAGTTTTTTAGACCT
ATACGAATCCAATATGCCGATTCTCTTCACACCCTGCCCACCTTATCTTA
CCACACTCTTCGTCTCGTCTCTTCCAGTTTTGCTCATCACCCCATTATCC
TTCCTTCTATCTTTTCTTTTCTTCTTCGTTCCACATTTTCTACTTTACCG
CCTTTTTCCTCCTTTTTCCTGTTTCCCCTTCCACCTCGCCTTCCCCACTC
TCTTTTCTTTTCCTTTTCCATCAACATTTTCCCTACTCGCCTTTCCCCTT
TTTTTCCTTCTTCTTTCCTTTCTCCCCTCATTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_g19.g1 MSMg01no103_g19.g1 CHROMAT_FILE:
MSMg01no103_g19.g1 PHD_FILE: MSMg01no103_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:21 2005
         (273 letters)



>mm_chr14_22802510_22803180
          Length = 671

 Score =  472 bits (244), Expect = e-137
 Identities = 265/275 (96%), Gaps = 6/275 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatgtggaaagatagtagccttagctaattgctcatttcgtttttatttaaatctctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 caatgtggaaagatagtagccttagctaattgctcatttcgtttttatttaaatctctgg 412

                                                                       
Query: 61  gaagctgctgtgtgaaaagtgaaagcagagaaaatagaagctttggcttttgttaaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gaagctgctgtgtgaaaagtgaaagcagagaaaatagaagctttggcttttgttaaattt 352

                                                                       
Query: 121 ccattttaagggttgggggg--cgtttgagtttcgttttgtgcaaagagtagagcaggct 178
           ||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ccattttaagggtgggggggggcgtttgagtttcgttttgtgcaaagagtagagcaggct 292

                                                                       
Query: 179 gggactcgcccggctgagccagaggcccccccccctacccccgggacgctcgactgccta 238
           |||||||||||||||||||||||||||||||    |||||||||||| | ||||||||||
Sbjct: 291 gggactcgcccggctgagccagaggcccccc----tacccccgggacacgcgactgccta 236

                                              
Query: 239 gccgttcccctgttcgcagntcaagcatccccggc 273
           ||||||||||||||||||| |||||||||||||||
Sbjct: 235 gccgttcccctgttcgcagttcaagcatccccggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 671
Length adjustment: 9
Effective length of query: 264
Effective length of database: 662
Effective search space:   174768
Effective search space used:   174768
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)