BAC Information

Click to search

BAC

Clone NameMSMg01-103L05
Chromosome14 (Build37)
Map Location 11,617,890 - 11,618,194
singlet/doubletsinglet
Overlap geneFhit
Upstream geneLOC100042415
Downstream geneLOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996, Ptprg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103L05.T7 (MSMg01no103_l05.b1)MSMg01-103L05.TJ (MSMg01no103_l05.g1)
ACCAG318503AG318504
length720698
length of high quality
(start - end)
308 (51 - 358)---
definitionCHROMAT_FILE: MSMg01no103_l05.b1 PHD_FILE: MSMg01no103_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:42 2005CHROMAT_FILE: MSMg01no103_l05.g1 PHD_FILE: MSMg01no103_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATGGGCTTTTCTAGATCTTCAAAGCAGAGGTGAGAGAGCT
GAGTTGATCAGAACAAACTTTAGGGAGGAAGGAAGTCCTAAGAACTTTTA
ACTATGGTGAATAGACACCATCAGCACCATCTTGTTCTCCTGTGGTTCAG
CCACGGAGACTCCTATACAACTCTTGGGTCAACTCTGGTCTATATGACCA
GTTCTATCCTAGGGTTGTGGCAAAAAGCAATGTTTCAGAACTAAGTTAGG
GGTGGGGGAAAATCCTGTTATATTCTCTTTTCCCCCCTTGCTATGAAGGT
TATATGTTCTGGATGTTGTTTCCCTCCCCACCCTGCAGGTTATTGGTGGC
TTTACAGCTTACGTTTTTATGCGACGATTATTAGGAGGGCTCCTGCTGAC
CTGCGATGTATATCCCCACAACCTGCATTATATTAGCCCTCGCCTTATGC
CCCTTTGATTTATGCACCATCTGCTCCTGCTTCTTATCCCCCCCCCTTCT
TTCCCCCCCACCTATATTCCTTTACCGTGTATTACCACTTACCACCCTAT
ATTATTATTAAAATTATACTCCATACAACAATTCCACTCCGATAACCCCT
GTGTATGCCTCTATTACTCACTGTTTTACCCCCCACTTTTATCCCCCCCA
CTTTTTTCCTATCCCTTCTA
CTCATGAAGCGAGAGGCCCGGNGGCGCCTGGTTTCTAAGCCCGCNGAACN
ANAGAAGGATTTCGGCACGCAGGGNGGNNAAANNGAGGGNNNNNCNNNGN
NNNGNNNNGNNNNGCNCCGCCCNACCAACNNCAAANAAACAGGACAGCAC
GAAGAGCAAAACAGAGCCCAGCAAGACCAGCACGACACCACCAAGGCCAC
CGAACAGGCACGCCAANAACCACACACAAAGAACGAACCGGACGGACAAG
ATTTCAACGGGCGGGCCGGACCACCCGGGCNGGCCAGGACCACCAGGGCC
GGGCAACCACCCGACATTTTTTTTATTCCGGCCAAGACCAGCTCCTACAC
ACAGAAAAAAATATCCCCCCCCCCCCTGCTAATGAACATTTACAGAATAA
TTTTCAACCACTAACTCTCTTGTGTAACACTACACATTTCCACCTTAACT
CTATTATCGACACCCCTTTGTGCCTCCTACTCTCACACACTACACCTATC
TCCTATACCCATGCACGCCCCAACCGTCCTACCTATGAACACACCAACAT
AAAACGACGTTCCAAACACACAATACCCTAAAAAACAACCCGAAACAATC
ATACCCACCAGTTTTAACACCCCACAAAAACACCTTCTAACCTTCTTTTT
TCGCCTATTTTTTTTTCTCACTTTCCCCTTAACAACCATTACAATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_l05.b1 MSMg01no103_l05.b1 CHROMAT_FILE:
MSMg01no103_l05.b1 PHD_FILE: MSMg01no103_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:42 2005
         (308 letters)



>mm_chr14_11617687_11618394
          Length = 708

 Score =  530 bits (274), Expect = e-155
 Identities = 298/306 (97%), Gaps = 2/306 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatgggctttt-ctagatcttcaaagcagaggtgagagagctgagttgatcaga 62
           ||||||||||||| ||  | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatgggcattaac-agatcttcaaagcagaggtgagagagctgagttgatcaga 262

                                                                       
Query: 63  acaaactttagggaggaaggaagtcctaagaacttttaactatggtgaatagacaccatc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acaaactttagggaggaaggaagtcctaagaacttttaactatggtgaatagacaccatc 322

                                                                       
Query: 123 agcaccatcttgttctcctgtggttcagccacggagactcctatacaactcttgggtcaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agcaccatcttgttctcctgtggttcagccacggagactcctatacaactcttgggtcaa 382

                                                                       
Query: 183 ctctggtctatatgaccagttctatcctagggttgtggcaaaaagcaatgtttcagaact 242
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 383 ctctggtctatatgaccagttctatcctagggttgtggcaaaaagtaatgtttcagaact 442

                                                                       
Query: 243 aagttaggggtgggggaaaatcctgttatattctcttttccccccttgctatgaaggtta 302
           |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||
Sbjct: 443 aagttaggggtgggggaaaatcctgttatattctccagtccccccttgctatgaaggtta 502

                 
Query: 303 tatgtt 308
           ||||||
Sbjct: 503 tatgtt 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)