BAC Information

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BAC

Clone NameMSMg01-104G05
Chromosome14 (Build37)
Map Location 81,990,357 - 81,990,832
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104G05.T7 (MSMg01no104_g05.b1)MSMg01-104G05.TJ (MSMg01no104_g05.g1)
ACCAG319013AG319014
length909681
length of high quality
(start - end)
---476 (81 - 556)
definitionCHROMAT_FILE: MSMg01no104_g05.b1 PHD_FILE: MSMg01no104_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:38 2005CHROMAT_FILE: MSMg01no104_g05.g1 PHD_FILE: MSMg01no104_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAAGAATCCGG
TGGAATTCCACATTAAGTTTTCCTATAAACAACTCATATCTAACAATGAC
CGTTAACAACACATATTTCAAGAATTTATTAGTCTACGATTTCTCATCGC
CCTGTTACTCCTGAAAACTACTTTCAAATTGCATCTTTCTATACTTGTTA
TTACCTTCCTCCCTTACCTTCTATATAATCTCACTTCTTACCTCACACTC
ATGACTTCAAACTACTCGGCTCCGTATCGTAAAACTACCTACATATTACC
TTCGTACAAACTTCCATCTGTCTTACTCCGTATCTCTTTTCGTTCTAACA
GCATATCATTCACCATATTATATGACATCCACAATACTTGTTAATTCTTT
GCTATAATAAATACCCATTAATGCTATATCACATTACACTGCGTTACTCC
ACACCCCCCATCCTCCACACAACCTACCGTCTACACCTTTACATCTTTTC
CCCTACCCACTACATCACTTTTCGATACTATACATAAAACTCCTTTTCAT
GTACAAACACCGCCTTTTCCCATTTTCTTCCCATTTTATGCGTATTATAC
CTCAATCCCTTCAACATCTTATTCAACCAGTATTCTCATCCCTTATCCTA
TTCCGCTTTTTTCTCCCGAAGCATCATCCCTTTTTGTCTCTAACCGCTAC
CCCTCTCCTCCTAATATTACTAATCTCCACGTAACACCATATCTATTCTA
TCCTCCATCATTCCTCTCCTATCCCCTTATACCATCCCGCTCTTATACCT
ACCTCTCCTCTTCTCCCTATACCATAATTTCACCGTTCATATTCCTGCAC
AACACTTCCTTTTCTCATATATTTTAAACAACCTATGTCTATATTGTGAG
CCTTATGTG
TTTTTCTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGAAATAAATTCATAGAG
CTAGATTTTGATAATCGGTCTTTATTTGTTGACATAATGTTTAGAGGCAA
AGCATTGCATCTGAATACTTCTGCTGTGGATCAGTTTTCTTTTGTGGACA
ATGTACAAAATCAGCTAAAACTCTGAGAGCTACAAATGGCCAAAACATAG
AAATCAAATTGAGCTTCTGTCCTTCCTTTCTCTATATGTAGAGAGTGGCC
TGTCTTCTTAACAGACACATTATGCAACATTAAATAAGGAGACCTGATGG
GTTTCAGTTTTTAATACATTCATATTTTCCAAACACTAAAAATATATTAG
TGGAATATAACCTAATGTGATTCCCGATTTTCTGATAAGAGGACATGTGC
ACCATTCTCTTACTTACACAAAGAAATAAAATTCTCTACACTCTAACCTA
ACTGACTATGAAAGTGCTTCTTTAATGGCCCACAACATTAACTTATAGTG
AACAGCAGCTGAGAGTAGAAGACAGTCTTGGTCAACAAGATATAATCCAG
GGACTTCCTGTCATCCTTTAATGTCTTGCATGGATAATACATGTGAGTAA
ACTCTTAGACGCTTTAAAAACAAAGTTAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_g05.g1 MSMg01no104_g05.g1 CHROMAT_FILE:
MSMg01no104_g05.g1 PHD_FILE: MSMg01no104_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:38 2005
         (476 letters)



>mm_chr14_81990157_81991032
          Length = 876

 Score =  835 bits (432), Expect = 0.0
 Identities = 465/476 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggaaataaattcatagagctagattttgataatcggtctttatttgttgacataatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggaaataaattcatagagctagattttgataatcggtctttatttgttgacataatgt 260

                                                                       
Query: 61  ttagaggcaaagcattgcatctgaatacttctgctgtggatcagttttcttttgtggaca 120
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ttagaggcaaagcaatgcgtctgaatacttctgctgtggatcagttttcttttgtagaca 320

                                                                       
Query: 121 atgtacaaaatcagctaaaactctgagagctacaaatggccaaaacatagaaatcaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 atgtacaaaatcagctaaaactctgagagctacaaatggccaaaacatagaaatcaaata 380

                                                                       
Query: 181 gagcttctgtccttcctttctctatatgtagagagtggcctgtcttcttaacagacacat 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagcttctgtctttcctttctctatatgtagagagtggcctgtcttcttaacagacacat 440

                                                                       
Query: 241 tatgcaacattaaataaggagacctgatgggtttcagtttttaatacattcatattttcc 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taggcaacattaaataaggagacctgatgggtttcagtttttaatacattcatattttcc 500

                                                                       
Query: 301 aaacactaaaaatatattagtggaatataacctaatgtgattcccgattttctgataaga 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaacactaaaaatatgttagtggaatataacctaatgtgattcccgattttctgataaga 560

                                                                       
Query: 361 ggacatgtgcaccattctcttacttacacaaagaaataaaattctctacactctaaccta 420
           || ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 gggcatgtgcacgattctcttacttacacaaagaaataaaattctctacattctaaccta 620

                                                                   
Query: 421 actgactatgaaagtgcttctttaatggcccacaacattaacttatagtgaacagc 476
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 actgactatgaaagtgcttctttaatggcccacaacattaacttagagtgaacagc 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)