BAC Information

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BAC

Clone NameMSMg01-104H24
Chromosome14 (Build37)
Map Location 78,678,163 - 78,678,749
singlet/doubletsinglet
Overlap geneTnfsf11
Upstream geneD230005D02Rik, LOC676171, EG629678, Gm1587, Dnajc15, Epsti1, AU021034
Downstream geneLOC219180, Akap11, Dgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104H24.T7 (MSMg01no104_h24.b1)MSMg01-104H24.TJ (MSMg01no104_h24.g1)
ACCAG319097AG319098
length700695
length of high quality
(start - end)
377 (49 - 425)587 (78 - 664)
definitionCHROMAT_FILE: MSMg01no104_h24.b1 PHD_FILE: MSMg01no104_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:47 2005CHROMAT_FILE: MSMg01no104_h24.g1 PHD_FILE: MSMg01no104_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCG
CGGAATTCTTTGTTTTCCTCTGAGCCCCATTTTTTAATGGGGTTATTTTA
TTTTCTGAGGTCCACCTTCTTGAGCTCTTTATATATGTTGGTATATTAGT
TCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATATGTTGGTGG
TCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTT
TCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCT
GTTTTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCC
CACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCT
TGATCCACTTAGATTTGACCTTAGTACAAGGTTATAAGTATGGATCGATT
CACATTCTTCTACACGATAATAACCAGTTGTGCCAGCACCAATTGTTGAA
AATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCA
AGTGATCATAGCTGTGTGGCTTCATTTCTGGGTCTTCAATTCTATTCCAT
TGTCCTACTTGTCTGTCTCTATACTATTACCTTGTAGCTCTTATCACAAC
TGCTCTGCAGTACAGCTCTAGGTTTGGCCTGTCGATTCTCGCCCCAATTT

NTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTACAAAATTGTAAAACCGTTG
TGTAATCACCATGAATCTAACACCCCCTATGGACTTTACATATACACAAC
CTGTACAGGCTCAAGAGAGAGGACTGTGAGTTTCATACACCGTGGGCCAT
GTCTCTTAGTAGTCTTACACATGTATAGACATCATCCATGTTTTAAGAAG
TTTCCAAACATCTAGGACATCCATGCTAATGCTCCACGAAATGAGTCTCA
GTCTATGTCCTGAACTTTGAAAGTCCCAAAGTACGTCGCATCTTGATCCG
GATCCAGCAGGGAAGGGTTGGACACCTGAATGCTAATTTCTTCACCAGCT
CGGAGCTTGAAAAATCCCCCAACATTTATGGAATAGAAATGGAATTCAGA
ATTGCCCGACCAGTTTTTCGTGCTCCCTCCTTTCATCAGGTTATGAGAAC
TTGGGATTTTGATGCTGGTTTTAACGACATACACCATCAGCTGAAGATAG
TCTGTAGGTACGCTTCCCGATGTTTCATGATGCCGAAAGCAAATGCTGGC
GTACAGGTAATAGAAGCCATCTTGGTTAACCCTTAGTTTTCCGTTGCTTA
ACGTCTTGTTAGAGATCTTGGCCCAGCCTCGATCGTGGTACCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_h24.g1 MSMg01no104_h24.g1 CHROMAT_FILE:
MSMg01no104_h24.g1 PHD_FILE: MSMg01no104_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:47 2005
         (587 letters)



>mm_chr14_78677963_78678949
          Length = 987

 Score = 1060 bits (548), Expect = 0.0
 Identities = 578/588 (98%), Gaps = 2/588 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attacaaaattgtaaaaccgttgtgtaatcaccatgaatctaacaccccctatggacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 201 attacaaaattgtaaaaccgttgtgtaatcaccatgaatctaacatcacctatggacttt 260

                                                                       
Query: 61  acatatacacaacctgtacaggctcaagagagaggactgtgagtttcatacaccgtgggc 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 acatatacacaacctgtacaggctcaagagagagggctgtgagtttcatacaccgtgggc 320

                                                                       
Query: 121 catgtctcttagtagtcttacacatgtatagacatcatccatgttttaagaagtttccaa 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 catgtctcttagtagtcttacacatgtatagacatcatccattttttaagaagtttccaa 380

                                                                       
Query: 181 acatctaggacatccatgctaatgctccacgaaatgagtctcagtctatgtcctgaactt 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 acatctaggacatccatgctaatgttccacgaaatgagtctcagtctatgtcctgaactt 440

                                                                       
Query: 241 tgaaagtcccaaagtacgtcgcatcttgatccggatccagcagggaagggttggacacct 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaagccccaaagtacgtcgcatcttgatccggatccagcagggaagggttggacacct 500

                                                                       
Query: 301 gaatgctaatttcttcaccagctcggagcttgaaaaatcccccaacatttatggaataga 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 gaatgctaatttcttcaccagctcggagcttgaaaaatcccccaacatttatggaata-a 559

                                                                       
Query: 361 aa-tggaattcagaattgcccgaccagtttttcgtgctccctcctttcatcaggttatga 419
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aagtggaattcagaattgcccgaccagtttttcgtgctccctcctttcatcaggttatga 619

                                                                       
Query: 420 gaacttgggattttgatgctggttttaacgacatacaccatcagctgaagatagtctgta 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaacttgggattttgatgctggttttaacgacatacaccatcagctgaagatagtctgta 679

                                                                       
Query: 480 ggtacgcttcccgatgtttcatgatgccgaaagcaaatgctggcgtacaggtaatagaag 539
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 680 ggtacgcttcccgatgtttcatgatgccgaaagcaaatgttggcgtacaggtaatagaag 739

                                                           
Query: 540 ccatcttggttaacccttagttttccgttgcttaacgtcttgttagag 587
           ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 740 ccatcttggttaacccttagttttccgttgcttaacgtcatgttagag 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)