BAC Information

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BAC

Clone NameMSMg01-104I15
Chromosome14 (Build37)
Map Location 102,631,014 - 102,631,287
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382936, Tbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
Downstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104I15.T7 (MSMg01no104_i15.b1)MSMg01-104I15.TJ (MSMg01no104_i15.g1)
ACCAG319127AG319128
length711712
length of high quality
(start - end)
274 (72 - 345)623 (70 - 692)
definitionCHROMAT_FILE: MSMg01no104_i15.b1 PHD_FILE: MSMg01no104_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:50 2005CHROMAT_FILE: MSMg01no104_i15.g1 PHD_FILE: MSMg01no104_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGG
AATTCTTAGTTCATCTCCCGACAACCTATTTCAGATGTCCTGCCAAGCTA
ACATTTTGATTCCAAGTTTTCAAAGAGCTTGGAACTAATAGTCAACAGGA
CTTTTTGATGATGAGCAAGACTTTGTCTGACCTGTGCTTCCCCTTCATTA
TAATTTGGTCAACAACTCAGCAAGGTCAAGCTCTTGAAGTTCTTTCTCCA
GTTAGATGGGGAAAAGGCTTTGATGGCAGAAGTTAGTTTTAACCATGGCC
AGAAAGCCAAGACATAATCACAAGAGATCTGTGAGGAGAGAATGGCGGTC
AAGGTCTACTCTGGACAATAAGAAAGTTCTAAAACCCATTTTCTACTATT
ATTTCCTTGTCATATAGATACATAACGTGACAACCATCTTAAATCGCTTT
TCCCAACATGCCCTTTCTAGTATGCTCTATGAGCAGTGCAGAACATTCGC
ACATCTGCTCTTAACACAAATGACTTTCATTGCACAGCTGCTAATGCTGT
GTTTTCCCCCACATAACTCATACCCATTTCGACACTCTGATTATCATCCC
CTCATCACATCTCGACGGCTTTACCCACTCCTCCTTATTGATCACTCTCA
CTCCCCGTCCATGCTTCCTCCATATGTAGCAAAATATTCTACGAATTCTA
TTGATCTCTGA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATCCGAATCACATGGGGAATTTCGCCTGTGG
CTCAGAACTAGGATAGGGAAAATTAGTTACTAACTTCAAGTAGAGAGGGC
AGCGAACAGGTATTAATGAAATAAATATCTTTGGCTCCAGGCAGAGTTAT
ACAGATAGATGGTATAACAAGATGGCTACTCTAGGCAGAGAGCTTAACAA
GTAAAAATCACCAGCTTCCTATAGGCAGATATGAGTGAAAGATTGCATTA
ATTGCTTTAAAGATGGTATAAAGATATATTGTTCTAATACGTCTTATGGG
ATACTATATTCTGTCTAGTGTGGGCTCCACAAGAATTCTGGGTTTAAATC
CTGCATTACAAAATAAAAAAGGCCTAAGAATAGGTAGATACAGTATTTTA
GTTTACTTCATGTGTTTTGGATTGTTTTAAATTTCAAAATGGGTGTGATG
TTGTGTTTTGTGGTTATATTATTTCTCAGGGAGAAAGGTCAAAATTAAGG
TTTTTCTGGTTACTGGCTCAAGGATATACTGATATGGGAGAAAGGTTTTG
TCTTTGCGTTTTTAGAAAACGTGATTAGTGTCTACACCTCCCAGAGTAAT
AGGGATCAGATTTGAGAGAGGGAGACCCCCTGAAGAACTAGATTTCAGAG
AATCTAACAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_i15.b1 MSMg01no104_i15.b1 CHROMAT_FILE:
MSMg01no104_i15.b1 PHD_FILE: MSMg01no104_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:50 2005
         (274 letters)



>mm_chr14_102630814_102631487
          Length = 674

 Score =  499 bits (258), Expect = e-146
 Identities = 270/274 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacctatttcagatgtcctgccaagctaacattttgattccaagttttcaaagagcttg 60
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 caacctatttcagaagtcctgccaagctaacattttgattccaagttttcaaagagtttg 260

                                                                       
Query: 61  gaactaatagtcaacaggactttttgatgatgagcaagactttgtctgacctgtgcttcc 120
           ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 gaactaaaagtcaacaggactttttgatgatgagcaagactttttctgacctgtgcttcc 320

                                                                       
Query: 121 ccttcattataatttggtcaacaactcagcaaggtcaagctcttgaagttctttctccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttcattataatttggtcaacaactcagcaaggtcaagctcttgaagttctttctccag 380

                                                                       
Query: 181 ttagatggggaaaaggctttgatggcagaagttagttttaaccatggccagaaagccaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagatggggaaaaggctttgatggcagaagttagttttaaccatggccagaaagccaag 440

                                             
Query: 241 acataatcacaagagatctgtgaggagagaatgg 274
           ||||||||||||||||||||||||||||||||||
Sbjct: 441 acataatcacaagagatctgtgaggagagaatgg 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)