BAC Information

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BAC

Clone NameMSMg01-104J15
Chromosome14 (Build37)
Map Location 23,767,249 - 23,767,692
singlet/doubletsinglet
Overlap gene1700112E06Rik
Upstream geneZfp503, EG665075, EG435392, LOC665068
Downstream geneKcnma1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104J15.T7 (MSMg01no104_j15.b1)MSMg01-104J15.TJ (MSMg01no104_j15.g1)
ACCAG319171AG319172
length709696
length of high quality
(start - end)
454 (47 - 500)242 (75 - 316)
definitionCHROMAT_FILE: MSMg01no104_j15.b1 PHD_FILE: MSMg01no104_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:55 2005CHROMAT_FILE: MSMg01no104_j15.g1 PHD_FILE: MSMg01no104_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATAATGCCCAACTCTCTTGTAAATGTTTGCTTGCCCCCACGAGA
ACTTGGAAATTAAAACAAATTTAATATAATCCCTTTAGATTTTTCTTGTT
TTCATCTCTTGGCTTTTATTTTATTTCACATCTTTTAATTGTGTTAGGAA
GTCTCTGTATAGCGTGGGAAAATACCTTGTTAGTTGGAAAATCCCCTTTC
TGCAATGGGCAGAGCATTTGAGAAGCTCCTATTGATACTGGGACAATGAT
GTCTTCTACTTTGATGAAAGAAAAGTCCAAACAAATGGCCAAGAGGATGA
GGTCCACTACCCATGTTGGTATTGAGCGTGACGGCACAGTGTATAACTCT
TCACTACTCTTGACTCTGGCTTAAATTCTATGCTACCAAACTTTGTTCAG
ACATTTTCCATGCAGGCTCTGTGCCTTTTGTCTCATTGCTCCCACCCCCC
TCCCCCGCCTCGTCCTGTATCGGCTGCAGCTCTGGCAGCTGCTGCTGCAC
ATTGTACAAGAGAGTACCGAGTATTCACCCTTTTCTTGGCAGTGCTGACC
CTTGCGTGGTCTGGACCTGCTATAGAGAGTGTGCCTCCTGTTTTCAGTCC
CTTTTATTTTTTCTTCAATGTCTCTACTTTTCACCCCAATTTTGCAAGCG
TTGCTTTAT
TTCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCA
TGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGT
CCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTC
CTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAAT
TTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGT
TGATTTTGTTACCCTCTATCATCATGCGTGGGAGACAAGCTCTCTTCTCT
GAGTTTCAGTGGTCATAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGG
TAAGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAA
GGCCCAAAACAGGATTCTTTCCCATATACTGTGTTGTTTTGGCCAGGACC
GTGGCTAGTTGTCTGGAGTCGAAGATGTCGCATCCTCTGAAGCTCTGTGG
TTCTTGCCGGGAAGGTGTCTGTTTGTCTGGATCTTAAGATGGTGCCGCCC
CAAAATCTCCGCTACTTTCTCGCCCGTCCCATATCGGCTGGCCCCTTTGC
TTTCCTTTATTTTACTCGTGCCTCCCTGTCCCTCGTAGGATTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_j15.b1 MSMg01no104_j15.b1 CHROMAT_FILE:
MSMg01no104_j15.b1 PHD_FILE: MSMg01no104_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:55 2005
         (454 letters)



>mm_chr14_23767046_23767899
          Length = 854

 Score =  781 bits (404), Expect = 0.0
 Identities = 434/444 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattccataatgcccaactctcttgtaaatgtttgcttgcccccacgagaacttggaaa 63
           |||||||||||||   |||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 204 gaattccataatgtttaactctcttgtaaatgcttgcttgcccccatgagaacttggaaa 263

                                                                       
Query: 64  ttaaaacaaatttaatataatccctttagatttttcttgttttcatctcttggcttttat 123
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 264 ttaaaacaaatttaatataatccctttagatttttcttgttctcatctcttggctttcat 323

                                                                       
Query: 124 tttatttcacatcttttaattgtgttaggaagtctctgtatagcgtgggaaaataccttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 324 tttatttcacatcttttaattgtgttaggaagtctctgtatagcgtgggaaaataacttg 383

                                                                       
Query: 184 ttagttggaaaatcccctttctgcaatgggcagagcatttgagaagctcctattgatact 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttagttggaaaatcccctttctgcaatgggcagagcatttgagaagctcctattgatact 443

                                                                       
Query: 244 gggacaatgatgtcttctactttgatgaaagaaaagtccaaacaaatggccaagaggatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gggacaatgatgtcttctactttgatgaaagaaaagtccaaacaaatggccaagaggatg 503

                                                                       
Query: 304 aggtccactacccatgttggtattgagcgtgacggcacagtgtataactcttcactactc 363
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 504 aggtccactacccatgttggtattgagcatgacggcacagtgtataactcttcactactc 563

                                                                       
Query: 364 ttgactctggcttaaattctatgctaccaaactttgttcagacattttccatgcaggctc 423
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 564 ttgactctggcttaaattctatgcaaccaaactttgttcagacattttccatgcaggctc 623

                                   
Query: 424 tgtgccttttgtctcattgctccc 447
           ||||||||||||||||||||||||
Sbjct: 624 tgtgccttttgtctcattgctccc 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)