BAC Information

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BAC

Clone NameMSMg01-105D03
Chromosome14 (Build37)
Map Location 11,381,701 - 11,382,215
singlet/doubletsinglet
Overlap geneFhit
Upstream geneLOC100042415
Downstream geneLOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105D03.T7 (MSMg01no105_d03.b1)MSMg01-105D03.TJ (MSMg01no105_d03.g1)
ACCAG319615AG319616
length700699
length of high quality
(start - end)
532 (59 - 590)499 (82 - 580)
definitionCHROMAT_FILE: MSMg01no105_d03.b1 PHD_FILE: MSMg01no105_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:44 2005CHROMAT_FILE: MSMg01no105_d03.g1 PHD_FILE: MSMg01no105_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTACTCCGGGTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTGGATTCCCAACCAACAAGGAATATGTGGTAA
AGAAGAAAATGGTGTTTTTTACTCTTCGGCAAACGAGAAATAGGTTGAGA
GTTGAGAACTGAATTATACTTGTCTATTTTGGTGTCATACCTGTTTTGTT
TGCTCTTCCCTCCCTCCATCCCCTGTGTCTTGGTTCAATGAGAGAATTTG
AGAATCATGGATGAAATGAACTATTTGTGCCAGTCAATGGCACCATGAGC
CTACACAGTTTGCATGGCCAACTGTCAAACCCTTCTAAAATTATGTAAAA
GACTTGGCACCAACATGAAAGGGGCCCTCTGTGGCCACAGACCACTCCGT
TTCAACATCAAAAAGAACAGCAGACATGATGGAGTGAAACTGAGCCAAGA
CACAGAACTAGGAATTCTCCATAGTATTCCTTAAAGCATTGTGGGTCACC
TTCAGAACTCACTAGGATAGCCACTTGTTGTTCATATGATATAAAGATTG
TGGGAAATAGTATTTTACCTACCTTTTTTGCCCCTACAACATCTCAAATA
AATTGTATCTGAGAGAATTGCTCCCTTGCAATACACACGGGGAAGAATGA
TGAAATTAAAAAGTAGCCATTTTATAAGTAATTATAAAATCATATGAATA

GTAATCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAACTCACTTAAAGAGA
TACAGGAGAACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAA
AACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACAAC
CAAACAGGTAGAAGTCCTTATAGAAAAACAGGAAAACACATACAAACAGG
TGATGGAAATGAACAAAACCATACTAGACCTAAAAAGGGAAGTAGACACA
ATAAAGAAAACCCAAAGTGAGGCAACGCTGGAGATAGAAACCCTAGGAAA
GAAATCTGGAACCATAGATGCCAGCATCAGCAACAGAATACAAGAGATGG
AAGAGAGAATCTCAGGTGCAGAAGACTCCATAGAGAACATCGGCACAACA
ATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTAAAAACATCCAGGA
AATCCAGGACACAATGAGAAGACCAAACCTACGGATAATAGGAGTGGATG
AGAATGAAGATTTTCAACTCAAAGGACCAGCAAACATCTTCAACAAAATT
ATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACC
AGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_d03.b1 MSMg01no105_d03.b1 CHROMAT_FILE:
MSMg01no105_d03.b1 PHD_FILE: MSMg01no105_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:44 2005
         (532 letters)



>mm_chr14_11381284_11382215
          Length = 932

 Score =  946 bits (489), Expect = 0.0
 Identities = 505/515 (98%), Gaps = 8/515 (1%)
 Strand = Plus / Minus

                                                                       
Query: 26  caaggaatatgtggtaaagaagaaaatggtgttttttactcttcggcaaacgagaaatag 85
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 932 caaggaatatgtggtaaagaagaaaatggtgttttttactcttcggcaaaggagaaatag 873

                                                                       
Query: 86  gttgagagttgagaactgaattatacttgtctattttggtgtcatacctgttttgtttgc 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 gttgagagttgagaactgaattatacttgtctattttggtgtcatacctgttttgtttgc 813

                                                                       
Query: 146 tcttccctccctccatcccctgtgtcttggttcaatgagagaatttgagaatcatggatg 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 tcttccctccctccatcccctgtgtcttggttcaatgagagaatttgagaatcatggatg 753

                                                                       
Query: 206 aaatgaactatt--------tgtgccagtcaatggcaccatgagcctacacagtttgcat 257
           ||||||||||||        ||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 aaatgaactatttctagagctgtgccagtcaatggcaccatgagcctacacagtttgcat 693

                                                                       
Query: 258 ggccaactgtcaaacccttctaaaattatgtaaaagacttggcaccaacatgaaaggggc 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ggccaactgtcaaacccttctaaaattatgtaaaagacttggcaccaacatgaaaggggc 633

                                                                       
Query: 318 cctctgtggccacagaccactccgtttcaacatcaaaaagaacagcagacatgatggagt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 cctctgtggccacagaccactccgtttcaacatcaaaaagaacagcagacatgatggagt 573

                                                                       
Query: 378 gaaactgagccaagacacagaactaggaattctccatagtattccttaaagcattgtggg 437
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 572 gaaactgagccaagacacagaactaggaattctccatagtattccttaaaacattgtggg 513

                                                                       
Query: 438 tcaccttcagaactcactaggatagccacttgttgttcatatgatataaagattgtggga 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tcaccttcagaactcactaggatagccacttgttgttcatatgatataaagattgtggga 453

                                              
Query: 498 aatagtattttacctaccttttttgcccctacaac 532
           |||||||||||||||||||||||||||||||||||
Sbjct: 452 aatagtattttacctaccttttttgcccctacaac 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)