BAC Information

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BAC

Clone NameMSMg01-105G08
Chromosome14 (Build37)
Map Location 98,850,036 - 98,976,687
singlet/doubletdoublet
Overlap geneLOC635593
Upstream geneEG668659, Dach1
Downstream geneLOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105G08.T7 (MSMg01no105_g08.b1)MSMg01-105G08.TJ (MSMg01no105_g08.g1)
ACCAG319762AG319763
length708705
length of high quality
(start - end)
368 (45 - 412)247 (75 - 321)
definitionCHROMAT_FILE: MSMg01no105_g08.b1 PHD_FILE: MSMg01no105_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:01 2005CHROMAT_FILE: MSMg01no105_g08.g1 PHD_FILE: MSMg01no105_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,976,324 - 98,976,687)(98,850,036 - 98,850,282)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGGA
ATTCTTCAAAGGGCTGCCAATTCCTTGAGGCCACTAGACAAGCACAGCTG
TACCATTATTACCTTTTACGCAATTCAGTAATAATCTCCACAGGTTTGTA
ATTTACTTTGAAGAAGCAACTTCATTCACTGAGAAAATAGACTAAATACA
CTGTTTGATTGATTATCTTGTCATCCTGTCAAGTTTAGAGAGAGGATCTA
GTCGTGGATGGGAGTGGATATCATTTTAAATTGAGAAAAGACTGTTGGAT
GTGTCCACTTATTTCTCCAAATTTGCCCTTTCCCATGCCTACCTCTGAGT
TTACTGCAATGATGTCATAGCTAGCCCCTTTGAGCCCCATGCTTATTTTC
TAGCTCTAATGTGTCTGTGGATATCAGGTTATTTTCTAAAGTATCACATT
ATTGATTTCTTAGCTCAAAAAAAATCACTAGCTTTTCATTGTCTAATACC
ATCCATAGCGTGTATTGTTTACCTCTATCTTTCTGTCCTCTCATAAACAA
ATTGTTCCCCTAAGGAACGCAGAATACATTGCAAGTATGAACCATAATTC
CCATAAATACTGAACTTCATCCCTCACTTCTGTCTAGTCATTACAAATGT
TCTCAATTCTTTGTCTTCCTAGTGGCCCATAACCCTGATTTCTTCCCATT
CTCGCCCC
TCAATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTGACTTCCTGTGACTCTCTCACCC
GTAGCAGCTAAAGCTCGGTTGCCACAAACACATAGCGAGACTACCATTGA
TTCTTTGTATAGTTAGATAACATATAACAAAGTTTGTAAGTGCCAATTGC
TAGCACCATTCAGTGGGGACAATGTAAATTTCATGTTGTGAATTTAATTT
GGAGTATGCACCATTTAGAGCGTTTGCTTGTTTAGAGCATGCACCGAGTA
CCCTCGATATTCATCTAATCACTATAACTAGGATTATTACACACACAATA
ATTATTTTGTACGCACTTAATCAACTGTTTACTTAGAGTCAGCTCTATAT
TCCCATACCAGTGTTTTAAAAGTAAACCTAACTGCACGCCCGATAACTAC
TAACATGTTCTTAAAGTAAATAATATTATTATCTACTGAAACATGACATC
ATCTCTTAATGCAAACCAACAAGAACATTTCCACTATTTTTTTTCTGCCC
AAACCATTGGGTCTAACGCATTCTCGTTTCCCCAATCCATGTACCCCATT
GTTTTATATTTCCTGCCTTTACCCTTTTTATCCAATTCCATTGTCGCACT
GCACCTTTCTGCCATTTTTTCACACTACTTCTGCCTTCCTCCCTCTCATT
GTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_g08.b1 MSMg01no105_g08.b1 CHROMAT_FILE:
MSMg01no105_g08.b1 PHD_FILE: MSMg01no105_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:01 2005
         (368 letters)



>mm_chr14_98976120_98976887
          Length = 768

 Score =  688 bits (356), Expect = 0.0
 Identities = 362/364 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcaaagggctgccaattccttgaggccactagacaagcacagctgtaccatta 64
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gaattcttcaaagggctgttaattccttgaggccactagacaagcacagctgtaccatta 509

                                                                       
Query: 65  ttaccttttacgcaattcagtaataatctccacaggtttgtaatttactttgaagaagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttaccttttacgcaattcagtaataatctccacaggtttgtaatttactttgaagaagca 449

                                                                       
Query: 125 acttcattcactgagaaaatagactaaatacactgtttgattgattatcttgtcatcctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 acttcattcactgagaaaatagactaaatacactgtttgattgattatcttgtcatcctg 389

                                                                       
Query: 185 tcaagtttagagagaggatctagtcgtggatgggagtggatatcattttaaattgagaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tcaagtttagagagaggatctagtcgtggatgggagtggatatcattttaaattgagaaa 329

                                                                       
Query: 245 agactgttggatgtgtccacttatttctccaaatttgccctttcccatgcctacctctga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agactgttggatgtgtccacttatttctccaaatttgccctttcccatgcctacctctga 269

                                                                       
Query: 305 gtttactgcaatgatgtcatagctagcccctttgagccccatgcttattttctagctcta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gtttactgcaatgatgtcatagctagcccctttgagccccatgcttattttctagctcta 209

               
Query: 365 atgt 368
           ||||
Sbjct: 208 atgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no105_g08.g1 MSMg01no105_g08.g1 CHROMAT_FILE:
MSMg01no105_g08.g1 PHD_FILE: MSMg01no105_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:01 2005
         (247 letters)



>mm_chr14_98849836_98850482
          Length = 647

 Score =  478 bits (247), Expect = e-139
 Identities = 247/247 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgacttcctgtgactctctcacccgtagcagctaaagctcggttgccacaaacacata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgacttcctgtgactctctcacccgtagcagctaaagctcggttgccacaaacacata 260

                                                                       
Query: 61  gcgagactaccattgattctttgtatagttagataacatataacaaagtttgtaagtgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcgagactaccattgattctttgtatagttagataacatataacaaagtttgtaagtgcc 320

                                                                       
Query: 121 aattgctagcaccattcagtggggacaatgtaaatttcatgttgtgaatttaatttggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattgctagcaccattcagtggggacaatgtaaatttcatgttgtgaatttaatttggag 380

                                                                       
Query: 181 tatgcaccatttagagcgtttgcttgtttagagcatgcaccgagtaccctcgatattcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgcaccatttagagcgtttgcttgtttagagcatgcaccgagtaccctcgatattcat 440

                  
Query: 241 ctaatca 247
           |||||||
Sbjct: 441 ctaatca 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)