BAC Information

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BAC

Clone NameMSMg01-105H12
Chromosome14 (Build37)
Map Location 87,447,643 - 87,448,073
singlet/doubletsinglet
Overlap geneDiap3
Upstream geneLOC100043301, EG629815, LOC100043306, LOC100043778, LOC100043310, LOC100043311
Downstream geneEG665324, Tdrd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105H12.T7 (MSMg01no105_h12.b1)MSMg01-105H12.TJ (MSMg01no105_h12.g1)
ACCAG319815AG319816
length707723
length of high quality
(start - end)
473 (69 - 541)434 (86 - 519)
definitionCHROMAT_FILE: MSMg01no105_h12.b1 PHD_FILE: MSMg01no105_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:06 2005CHROMAT_FILE: MSMg01no105_h12.g1 PHD_FILE: MSMg01no105_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGAGCCGCGGAA
TTCCTCCATTGCCGAAGGGAGTGCAGACTTGTATAGCCACTTTGGGAAAA
CCATATGGAGGTTTCTCACAAAATTGGGAATCCATCTACCTCAAGATCCA
GCTATACCACTCCTGGGCACGTACCCAAAAGACTCTCCAGCCTTCCACAA
GGAACTTGCTCAAGTATGCTCACAGCAGCTTTATTGGTAACAGCTAGAAG
TTGCAAACAACCCAGATGCCCTTCAACTGAAGACTAAATAAAGAAACTGT
GGTAATTTACATTACTTTTTTGTTACAAAACATGAAGATCATGAAACTTG
CAGGCAAATGGATGGAACTAGAAAAAAATCATCCAGAGTAAGGTAGCTCA
GACTGAGACAGATAAACATGGTATGTGCTCACTGATAAACGGATATTAGC
TGTAAAGGATAATCATGCTACAATTCACAGACTCATTAAGAATCCTTGAG
TTAGAAAAGTATCATACAGAAAGAGCAGGTATCATGGTCTCAGGTTTAAA
AGGTGATCAATGTTGTCTCCATAGTCCTGTGTGTTCGAGCAAAGTATTTA
GCATGCAATGCAATGTCATGAAACCATGTCTAGTGAGGTCAATGATCATT
GGAGAAAGATTACAATTGTTCTGGGATCTTTAAGATACCAATCCGAAATC
TGATATC
TTTACTTTTTCGCCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGTAGAAAGACAG
ATACAGTCAGCACACTCAAGCAACTGCCAGGCCCGCACACATGAGCCTCA
GAAGACACAAAGCCAGGAAGGCAAGTTCAGGGAGATTTCTAGGAAACAAT
GAATTGTTCACATTCTTAAAATGTAGTCAAGAAGGACTAACGTTACAAGA
ATGGTTCAAAAAAGTAGGTTCACGTCACACAAGAAATCCAAAAATATTAT
ATCCACAAGGCATTTTAAAAGATAAAAGGTAAATCATATATGACGTCCCG
CACCTGCAATCCCAGCACCCAGGACTCTGAAGCACAAGTAATTTGAGTTC
AAGGGTGGCCTAGGCAATAGAACTGCAGGGCAAGTCAAAAATGTATCATG
AGGCTCCTGTCTCAATTAATTCTTTTAATCCATAAGAAGATAAAACAGGC
ACCAAAATTCCTATTGGCAGGCAGGCACAAAAGATCTTCTAGCAAAAAAT
GGAAAATCATTTTATTGTGAACTATTTCAAAATCTCAACATTTTCCAAAA
CTACTCCTTTCCCATTTCATTTCCTATTGCTTTCCTCTTTAATGGTTGCT
TCACTCTAGACAAAAGACAGCATCTTATCCACATTAATTCCGACTGGCCT
TCTCTATGTGCATCCCTCTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_h12.g1 MSMg01no105_h12.g1 CHROMAT_FILE:
MSMg01no105_h12.g1 PHD_FILE: MSMg01no105_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:07 2005
         (434 letters)



>mm_chr14_87447443_87448276
          Length = 834

 Score =  804 bits (416), Expect = 0.0
 Identities = 428/432 (99%), Gaps = 1/432 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtagaaagacagatacagtcagcacactcaagcaactgccaggcccgcacacatgag 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 201 actgtagaaagacagatacagtcagcacactcaagcaactgccaggcaggcacacatgag 260

                                                                       
Query: 61  cctcagaagacacaaagccaggaaggcaagttcagggagatttctaggaaacaatgaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcagaagacacaaagccaggaaggcaagttcagggagatttctaggaaacaatgaatt 320

                                                                       
Query: 121 gttcacattcttaaaatgtagtcaagaaggactaacgttacaagaatggttcaaaaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttcacattcttaaaatgtagtcaagaaggactaacgttacaagaatggttcaaaaaagt 380

                                                                       
Query: 181 aggttcacgtcacacaagaaatccaaaaatattatatccacaaggcattttaaaagataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggttcacgtcacacaagaaatccaaaaatattatatccacaaggcattttaaaagataa 440

                                                                       
Query: 241 aaggtaaatcatatatgacgtcccgcacctgcaatcccagcacccaggactctgaagcac 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggtaaatcagatatgacgtcccgcacctgcaatcccagcacccaggactctgaagcac 500

                                                                       
Query: 301 aagtaatttgagttcaagggtggcctaggcaatagaactgcagggcaagtcaaaaatgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtaatttgagttcaagggtggcctaggcaatagaactgcagggcaagtcaaaaatgta 560

                                                                       
Query: 361 tcatgaggctcctgtctcaattaattcttttaatccataagaagataaaacaggcaccaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 tcatgaggctcctgtctcaattaattcttttaatccataagaagataaaacaggcac-aa 619

                       
Query: 421 aattcctattgg 432
           ||||||||||||
Sbjct: 620 aattcctattgg 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)