BAC Information

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BAC

Clone NameMSMg01-105I08
Chromosome14 (Build37)
Map Location 105,145,799 - 105,146,078
singlet/doubletsinglet
Overlap genenone
Upstream geneEdnrb, Pou4f1, 2610206B13Rik, D130009I18Rik
Downstream geneLOC435420, Rbm26, LOC621103, LOC100043466, Ndfip2, LOC620376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105I08.T7 (MSMg01no105_i08.b1)MSMg01-105I08.TJ (MSMg01no105_i08.g1)
ACCAG319854AG319855
length710689
length of high quality
(start - end)
437 (43 - 479)279 (73 - 351)
definitionCHROMAT_FILE: MSMg01no105_i08.b1 PHD_FILE: MSMg01no105_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:11 2005CHROMAT_FILE: MSMg01no105_i08.g1 PHD_FILE: MSMg01no105_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATAATTTGCGGCCTGTATACGACTACTATTTCGAGAGGATCCGCGGAAT
TCTCAATTGATTGCTAACAAATAGCTGAGAAGCACCTAAAGAAATGTTCA
ACATCAGGGAAATGCAAATCAAATCAACCCTGAGATTCCACCTCACACCA
ATCAGAATAGCTAAGATCAAAAATTTAGGTGACAGCAGATTCTGGAAAGG
ATGTGGAGAAAGGAGGAGTCCTCCATTGTTGGTGGGATTGCAAGCTGGTA
TAACCACTCTGGAAATCAGTCTGGTGATTCCTCAGAAAATTGGACATAGT
ATTACATGTGGACCCAGCTATACTACTCCTGGGCATATACTCAAAAGATG
TTCCAACATATAACAAGGACACATGATCCACTATGATCATAGTTGCCTTA
TTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGA
ATGGATACAGAAAATATGGTACATTTACACAATAGAGTACTACTCAACTA
TTAAAAACAATGACTTCATAAAATTAGGCAAATGTATGGAACTAGAAACT
ATCTTCCTGACTGAGGTAACCAAGACCCTCTCTCTCTCTCTCTTTCTCTC
TCTCCCTCTCTCTTCTCTCTTATCCTTTTTTTATTTTCCCTTTTCTCTTT
TGTCCCAATATCCTCTCCTAGATTCTCCATTTTCCCCATTTTTCCCGCTT
TTCACCTCCG
CATGATAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTAAGATTTTAACTTAGGGTGAATGA
TCTGTAAGGAGTCACTCTATGGACTCAGTGGCTTCATGCTTGTGGTACAG
GTGTGAGGGCCTCAGGGTTTTGTTGTTGTCATTTTTTTATTTTGCTTTGT
TTTTATCTCCATTGCTCATGTAAAAAGCCAGGCATGATAGTGTATACTGT
CAACTCACATTCTTGCTTCTGGTTGTTTATTGCTGAGTCATAGCTTCTCT
CTTAAAGGTAGAGCTTTTTTATGACTGACTCATAGAACAGCCTTGGCTGG
TTCTAGCCTTCCTGGTGTTGCTGTAGTGCCCCCTCTAAACCTGACGGTAG
AGTGCCTGTGGTCCTTCCAGCACCAGGCTTCTACTTACATGGTCTGTGCT
ATTTGATGCTATTATGGGTACCCTTCTTTGTCACATCCCTCGTATAGATT
TCATTTTTTTTCACAAACAGTGTCTAATCTTAAACTTATCCTCTTATTGA
TCATTGTCTTCTTATTTCTTCAATTATACCACCATTTCTTCTCCTCCTTT
ATGTAACCATCTACCTATCTTTAAAGTCCTTTTTCCAACGCCCTGCAGCC
CCTTTTTCCTGTTCCATAACATCATTATTTTCCTTATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_i08.g1 MSMg01no105_i08.g1 CHROMAT_FILE:
MSMg01no105_i08.g1 PHD_FILE: MSMg01no105_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:11 2005
         (279 letters)



>mm_chr14_105145599_105146278
          Length = 680

 Score =  478 bits (247), Expect = e-139
 Identities = 272/281 (96%), Gaps = 3/281 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttaagattttaacttagggtgaatgatctgtaaggagtcactctatggactcagtggc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 480 ttttaagattttaacttagggtgaatgatctgtaaggagtcactctatgggctcagtggc 421

                                                                       
Query: 61  ttcatgcttgtggtacaggtgtgagggcctcagggttttgttgttgtcatttttttattt 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 420 ttaatgcttgtggtacaggtgtgagggcctcagggttttgttgttgtcatttttt-attt 362

                                                                       
Query: 121 tgctttgtttttatctccattgctcatgtaaaaagccaggcatgatagtgt--atactgt 178
           || |||||||||||||||||||||||||||||||||||||||||| |||||  |||||||
Sbjct: 361 tgttttgtttttatctccattgctcatgtaaaaagccaggcatgagagtgtgtatactgt 302

                                                                       
Query: 179 caactcacattcttgcttctggttgtttattgctgagtcatagcttctctcttaaaggta 238
           ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 301 caactcagattcttgcttctggttgtttatcgctgagtcatagcttctctcttaaaggta 242

                                                    
Query: 239 gagcttttttatgactgactcatagaacagccttggctggt 279
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gagcttttttatgactgactcatagaacagccttggctggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 680
Length adjustment: 9
Effective length of query: 270
Effective length of database: 671
Effective search space:   181170
Effective search space used:   181170
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)