Query= MSMg01no106_c06.b1 MSMg01no106_c06.b1 CHROMAT_FILE:
MSMg01no106_c06.b1 PHD_FILE: MSMg01no106_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:09 2005
(563 letters)
>mm_chr14_86502643_86503603
Length = 961
Score = 1031 bits (533), Expect = 0.0
Identities = 555/563 (98%), Gaps = 2/563 (0%)
Strand = Plus / Plus
Query: 1 ctgttgagggacatctgggttctttccagcttctggctattataaataaggctgctatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgttgagggacatctgggttctttccagcttctggctattataaataaggctgctatga 260
Query: 61 acatagtggagcatgtgtccttattacaagttgaaacatcttctgggtatatttccagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatagtggagcatgtgtccttattacaagttgaaacatcttctgggtatatttccagga 320
Query: 121 aaggaattgctggatcttccggtagtactatgtccaattttctgaggaaccaccagactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggaattgctggatcttccggtagtactatgtccaattttctgaggaaccaccagactg 380
Query: 181 atttccagagtgggtgtaccagcttataatcccaccaacaatagaggagtgtccctcttt 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttccagagtgggtgtaccatcttataatcccaccaacaatagaggagtgtccctcttt 440
Query: 241 ctccacatcctcgccagcatctgctgtcccatgaattttttatcttatccattctgacag 300
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 441 ctccacatcctcgccagcatctgctgtcccctgaattttttatcttagccattctgacag 500
Query: 301 tttgaatcttacatattcctcaaagacctatgtattaaaatggccacttgggttgaaatt 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 tttgaatcttacatattcctcaaagacctgtgtattaaaatggccacttgggttgaaatt 560
Query: 361 tgaggcaggaaacctttgtggaatgaagttatgtcatgaggaaacacttgtgcacggaat 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 tgaggcaggaaacctttgtggaatgaagttatgtcatgaggaaacacttgtgcaaggaat 620
Query: 421 actcaggagactgagttgggtctctttcctctcttttacttcccatgaaatgaaaagccc 480
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 actcaggagactgagttgggtctctttcctct--tttacttcccatgaaatgaaaagccc 678
Query: 481 aacagttgtatactattacaataaaacatactgtgctaacaaagacccaaagcaacagat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aacagttgtatactattacaataaaacatactgtgctaacaaagacccaaagcaacagat 738
Query: 541 ccacatgactacagatagcaact 563
||||||| |||||||||||||||
Sbjct: 739 ccacatggctacagatagcaact 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 961
Length adjustment: 10
Effective length of query: 553
Effective length of database: 951
Effective search space: 525903
Effective search space used: 525903
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_c06.g1 MSMg01no106_c06.g1 CHROMAT_FILE:
MSMg01no106_c06.g1 PHD_FILE: MSMg01no106_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:09 2005
(509 letters)
>mm_chr14_86581271_86582179
Length = 909
Score = 917 bits (474), Expect = 0.0
Identities = 501/514 (97%), Gaps = 10/514 (1%)
Strand = Plus / Minus
Query: 1 tggaagaccactgggtcacacagatttgg----gcccttttgattttctgttaagttcaa 56
||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 709 tggaagaccactgggtcacacagatttggggaag----tttgattttctgttaagttcaa 654
Query: 57 aacaaacaaggcaggaggaggggaaaaactgtcttgacaaatgtcactagcagcctgaaa 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aacaaacaaggcaggaggaggggaaaaactgtcttgacaaatgtcactagcagcctgaaa 594
Query: 117 ccaaagaacaca-ttaaaaaccctgtctgctcaggtgaaaacttgacaggtggcaccctg 175
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ccaaagaacacatttaaaaaccctgtctgctcaggtgaaaacttgacaggtggcaccctg 534
Query: 176 aaggtggcttggacctgttcagctcgccttgccctgtggcctctgatgttcataaatttt 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aaggtggcttggacctgttcagctcgccttgccctgtggcctctgatgttcataaatttt 474
Query: 236 cctcctgcagataggtcaggtggtgtctggacataacgtgggccctcatttccagagcct 295
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 473 cctcctgcagataggtcaggtggtgtctggacacaacgtgggccctcatttccagagcct 414
Query: 296 tcacaccaccttggaggcagtcaggaggctcattctcagtggaggctttttttttccccc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 413 tcacaccaccttggaggcagtcaggaggctcattctcagtggaggcttttttttttccc- 355
Query: 356 ttgttcctgcttgtcactgccggtgcagaaccacctctgctcatcattctcttttaatct 415
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttgttcctgcttgtcactgctggtgcagaaccacctctgctcatcattctcttttaatct 295
Query: 416 ggctcagtgatgaaaaagacctataggggcctgcctggcaggtgaactatccagatgcta 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ggctcagtgatgaaaaagacctataggggcctgcctggcaggtgaactatccagatgcta 235
Query: 476 aatctccagcattaattttgctggcagtggcttc 509
||||||||||||||||||||||||||||||||||
Sbjct: 234 aatctccagcattaattttgctggcagtggcttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
