BAC Information

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BAC

Clone NameMSMg01-106J09
Chromosome14 (Build37)
Map Location 81,004,467 - 81,089,877
singlet/doubletdoublet
Overlap genenone
Upstream geneSugt1, Lect1, Pcdh8, EG629734, Olfm4, LOC672828
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106J09.T7 (MSMg01no106_j09.b1)MSMg01-106J09.TJ (MSMg01no106_j09.g1)
ACCAG320630AG320631
length1,2891,280
length of high quality
(start - end)		685 (89 - 773)647 (125 - 771)
definitionCHROMAT_FILE: MSMg01no106_j09.b1 PHD_FILE: MSMg01no106_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:14 2005CHROMAT_FILE: MSMg01no106_j09.g1 PHD_FILE: MSMg01no106_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,004,467 - 81,005,151)(81,089,233 - 81,089,877)
sequence
CCATCTCTTTTNNTTCCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAAAGTAAGGGTAGTCCCCCTGGATGTAGAAAATAGCAT
CCCTCTTTTCTGTGTATTGACTCCAAGATACAAAGTTGTTAGTTTTTAAC
ATAATAGTGCCAATATGATTTTTGCTTCTGGTTGACTTTACTTTAAACAT
TTTATATATTCATTATCTATTTCTTGTTTCAGAAATGGAGGTACCCAAGG
AACAAATACTAAACTGTGAAACCAAAGCCAGTCTGGGTGGCCCACTTTGT
GACTGTCACTTTCTTCATGAGCCTGTGGTTCAGTTCCTAGCCTGCAGATG
CGCAGCATCAGATCGATAAGGTTTTCCTTCTCATTCATTTCACACAATGT
CCAGTGTTGATTCTCATAGACAGTTTTACAAGTGGGTCTAGAGCTGACCA
TGTAACCTAGGCTGGCTGGCCATTGAGTCCTAGGGATGCAACGATTACAG
GGGCTGTCACCATGTGTGGGTCCTTTTACTTGGGCTCTAGGGATTACATT
CGGGGGTTCATCCTTGAGAGGTAACCTTACCAGCTGAGCTCTATCTCCAA
CTCAGCTGAGGAATCTTTAATTACTTTCTTTACTATTGTAAATTTCATAT
ATAAATACAATAGAATATGGTCACATCTGCTTTGGCTTCCTCCTCCATAC
TTTCACATCCTCCTCAACATGTTCTTTCTCAACTTAGTGTACTACAATTA
CAATTACAATTACAATTACAATTACAATTACAATTACTATTACTATTACT
ATTACTATTACTATTACTATTACTATTACTATTACTATTACTATTATTAT
TACCTACAAGGTGCCGTCAGTGATGCCTATGCATGTGTGGGTGCTGAGGC
CATCCTATTGAGCATGAAATCTTATCACTGGTCCCTTCCTCAAACAAAAC
CGATTTTCTTTCCCCGAGAAACTATCAGTGGCCATTATCTCCTCAGTTAA
ACTGGATCTGAAAACCTTTTACCTCTTTCAGGTGGGGACTTTGGCCCCTT
TTGATCTTTGGCCAAAAACCTGGAAAGAATTGAATTTCTGGATGGTGAAA
ATCCCTGACTCTCCAAAAAATAACACTTCTTATCTGTGACCCCCGGGGTC
TTAAATTATCCCAACCCTCCCTTCCATGTTCCCCAACCCTTTTGTTCGCA
ATTGGGATAAAACGTGTTCTCTTCCTCCCCCCTTATATTTTTTATACCCC
AACCCGTTAATATATATTGGTCTTTTCCCACACCTAAAA

NCCAATTTTTTTNNTAAGCATGGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTGATTAATAGCACACCCTT
TAAATGTAAATTTTAGAACCCCTTACAGTTGCCAAAATGTCTCTTTCTCA
TTTAATCCGATTAAAGCATTCTTTTAAAAACCATTAATTCTTCCCTCTCA
GATCTATTTGACATTCCAAGTACTATCCTTCCATGGGTCAAGTAGTTGAA
TGAATGTTTTGCAGAACAGTTTTGTCTGAAAAATGAGGAAAATCTTCCTC
TACTCACTTCTCAAACATTCTATAAAACATGGAGAGATAGGAAAATTGAA
TCACAGAATTAGATTTTCCATATGGAGGCAATGACACTTGTTTATTGTTA
ACCTCAATTAGGCTTATAATAGCCTGCTTAATTCCCTAAAACTAAATTGT
CATGGTCCTAGTATTCAGTTCCCTTTTAGAAGCCAATGTGCTTTTGTTAT
TAAACTCCAATACAGTTAGTGTGGTTTTCTTCCACACTGCTTGGCAACCA
TAAATGCACCTCCATAACATAGTGTGTCTAACTGTGCCACCCCGTAGGAC
TTATGGATAAAATCAACTGCGGGTCAATAGTTTTTTGCCTGAAAGCTCCA
GGCATGCCTCCAATTATCACTAGTTAAAATTCTTGCTCTTCACCTTGCTT
GATGTAACTACAGGGGAATATTTCCAGTAAAATTCAGCAACAGCATAGCA
ACAACGTGACTACTACTGCCACGTGACATTTTAAGTTGAACAAGATACTG
ATTCTGTGTGACAATCCTGAGAGCAAAGGGGAAAAATTATGGTAAGAAAG
ACAGTGCAAACTCAGGTGGGGTAGTACAGTAGGCAGTAAAGGTGCTCCCA
GAGACTGGTTCTAAAAAAAGTGCTTGCCTCTATGCACAAAATGTTGTGCT
AAAACAGCTGTTTTTGGACTTAGGGGGCTACTTTTTTTTAGGCCTTTTGA
AATGTGGAAAGGGCCCTGTCAGCAGTTAAAAAAATGAATTACACCGGCTG
TTCGGAACATATTAATACCCCTGCAGTCTGGGGGGGTTTTATAAGATTTC
CCAATGGGTTCCCCATATATTTTGTTCTTTCAAAATATAGGGTAAATCAT
CCCTCTCGGGCATAAAAATAATAAAGCCTCTATTTTATTTGGGACAAGGG
ATGTAATATCTACATACTGGTAACTTATTCTTTTTTTTATATCTCTCGCC
TTATATCTATTGTGTGAAATCTTCCTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_j09.b1 MSMg01no106_j09.b1 CHROMAT_FILE:
MSMg01no106_j09.b1 PHD_FILE: MSMg01no106_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:14 2005
         (685 letters)



>mm_chr14_81004267_81005357
          Length = 1091

 Score = 1247 bits (645), Expect = 0.0
 Identities = 675/685 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaaatagcatccctcttttctgtgtattgactccaagatacaaagttgttagttttta 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 agaaaatagcatccctcttttctgtgtattgaatccaagatacaaagttgttagttttta 260

                                                                       
Query: 61  acataatagtgccaatatgatttttgcttctggttgactttactttaaacattttatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acataatagtgccaatatgatttttgcttctggttgactttactttaaacattttatata 320

                                                                       
Query: 121 ttcattatctatttcttgtttcagaaatggaggtacccaaggaacaaatactaaactgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcattatctatttcttgtttcagaaatggaggtacccaaggaacaaatactaaactgtg 380

                                                                       
Query: 181 aaaccaaagccagtctgggtggcccactttgtgactgtcactttcttcatgagcctgtgg 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaccaaagccagtctggttggcccactttgtgactgtcactttcttcatgagcctgtgg 440

                                                                       
Query: 241 ttcagttcctagcctgcagatgcgcagcatcagatcgataaggttttccttctcattcat 300
            |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 441 ctcagttcccagcctgcagatgcacagcatcagatcgataaggttttccttctcactcat 500

                                                                       
Query: 301 ttcacacaatgtccagtgttgattctcatagacagttttacaagtgggtctagagctgac 360
           |||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 501 ttcacacaatgtccagcgttgattctcatagccagttttacaagtgggtctagggctgac 560

                                                                       
Query: 361 catgtaacctaggctggctggccattgagtcctagggatgcaacgattacaggggctgtc 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 catgtaacctaggctggctggccattgagtcccagggatgcaacgattacaggggctgtc 620

                                                                       
Query: 421 accatgtgtgggtccttttacttgggctctagggattacattcgggggttcatccttgag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accatgtgtgggtccttttacttgggctctagggattacattcgggggttcatccttgag 680

                                                                       
Query: 481 aggtaaccttaccagctgagctctatctccaactcagctgaggaatctttaattactttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggtaaccttaccagctgagctctatctccaactcagctgaggaatctttaattactttc 740

                                                                       
Query: 541 tttactattgtaaatttcatatataaatacaatagaatatggtcacatctgctttggctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttactattgtaaatttcatatataaatacaatagaatatggtcacatctgctttggctt 800

                                                                       
Query: 601 cctcctccatactttcacatcctcctcaacatgttctttctcaacttagtgtactacaat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cctcctccatactttcacatcctcctcaacatgttctttctcaacttagtgtactacaat 860

                                    
Query: 661 tacaattacaattacaattacaatt 685
           |||||||||||||||||||||||||
Sbjct: 861 tacaattacaattacaattacaatt 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1091
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1081
Effective search space:   729675
Effective search space used:   729675
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no106_j09.g1 MSMg01no106_j09.g1 CHROMAT_FILE:
MSMg01no106_j09.g1 PHD_FILE: MSMg01no106_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:14 2005
         (647 letters)



>mm_chr14_81089033_81090079
          Length = 1047

 Score = 1232 bits (637), Expect = 0.0
 Identities = 643/645 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagttgccaaaatgtctctttctcatttaatccgattaaagcattcttttaaaaaccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 acagttgccaaaatgtctctttctcatttaatccgattaaagcattcttttaaaaaccat 786

                                                                       
Query: 61  taattcttccctctcagatctatttgacattccaagtactatccttccatgggtcaagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 taattcttccctctcagatctatttgacattccaagtactatccttccatgggtcaagta 726

                                                                       
Query: 121 gttgaatgaatgttttgcagaacagttttgtctgaaaaatgaggaaaatcttcctctact 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 725 gttgaatgaatgttttgcagaacagttttgtctgaagaatgaggaaaatcttcctctact 666

                                                                       
Query: 181 cacttctcaaacattctataaaacatggagagataggaaaattgaatcacagaattagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cacttctcaaacattctataaaacatggagagataggaaaattgaatcacagaattagat 606

                                                                       
Query: 241 tttccatatggaggcaatgacacttgtttattgttaacctcaattaggcttataatagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tttccatatggaggcaatgacacttgtttattgttaacctcaattaggcttataatagcc 546

                                                                       
Query: 301 tgcttaattccctaaaactaaattgtcatggtcctagtattcagttcccttttagaagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tgcttaattccctaaaactaaattgtcatggtcctagtattcagttcccttttagaagcc 486

                                                                       
Query: 361 aatgtgcttttgttattaaactccaatacagttagtgtggttttcttccacactgcttgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aatgtgcttttgttattaaactccaatacagttagtgtggttttcttccacactgcttgg 426

                                                                       
Query: 421 caaccataaatgcacctccataacatagtgtgtctaactgtgccaccccgtaggacttat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 caaccataaatgcacctccataacatagtgtgtctaactgtgccaccccgtaggacttat 366

                                                                       
Query: 481 ggataaaatcaactgcgggtcaatagttttttgcctgaaagctccaggcatgcctccaat 540
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggataaaatcaattgcgggtcaatagttttttgcctgaaagctccaggcatgcctccaat 306

                                                                       
Query: 541 tatcactagttaaaattcttgctcttcaccttgcttgatgtaactacaggggaatatttc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tatcactagttaaaattcttgctcttcaccttgcttgatgtaactacaggggaatatttc 246

                                                        
Query: 601 cagtaaaattcagcaacagcatagcaacaacgtgactactactgc 645
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cagtaaaattcagcaacagcatagcaacaacgtgactactactgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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