BAC Information

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BAC

Clone NameMSMg01-106O02
Chromosome14 (Build37)
Map Location 94,406,146 - 94,493,206
singlet/doubletdoublet
Overlap genenone
Upstream genePcdh9, LOC668566
Downstream geneLOC100043356, LOC100043783
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106O02.T7 (MSMg01no106_o02.b1)MSMg01-106O02.TJ (MSMg01no106_o02.g1)
ACCAG320846AG320847
length1,1941,166
length of high quality
(start - end)		673 (85 - 757)733 (91 - 823)
definitionCHROMAT_FILE: MSMg01no106_o02.b1 PHD_FILE: MSMg01no106_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:56 2005CHROMAT_FILE: MSMg01no106_o02.g1 PHD_FILE: MSMg01no106_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,406,146 - 94,406,818)(94,492,474 - 94,493,206)
sequence
CCATTTCTNNNNATCATTTGGCGCTATCACTCCTATGGGAGAGGATCCGC
GGAATTCTCCACTGATACGGAATGCGTTATTCGCTGGTATCTGGAATATA
CCTCTAGGCCCATGCGACACCTAGGAATAGAATGGTACTAAAATTAGTAG
GTAGAAATTCTAAGAAGTAGAACCTGATGATTTAGGTCATTCAGGCCATG
TTTTTGAAGGTTATAGAGGGATAACAAGCCAAGAATTGCAAATTTGCCCT
GCTTCATGGGCTTTTAGAGTACAAGATTAATTCTATATCTCTATCATATG
CTCCCACCATTGCATGCTAACTTATTGTAATAAGTTACACCCACCCCCCA
GATATGAAGCTAGTAGGTAATAGACAGGGACCTGTACAACCTTAGCACAT
ATCTATTTTTCCTTATTATAAGACGATTCTAGTTTGTTTTACTGAGAAAT
TTAACTACATAGCCAAGAAATATATAACACTAGCTTTTATTTATTGTTTG
ATATTTTTCATATTTATTAATTGGAAATAACTACATGGACTTTAAATATC
GACTTTTATGCTTTACCAACAATTGTAACACTAGAGAAGATTGCCTGTAA
GGAAAATTCATAGTTTTTTTTTTAAGTCAATTTTAAATGTTATTTTAAAG
AGGAATTCCAATTTACTTTTGTTTGTTTTTTCACCATCTCAAAATAAACT
CTGGGTGAATTAAAAAGTATTTTCTTGATAATTAATCACAAATAGAAACA
CACAGAGTAACTTAACAAAATATAACTTTAATAACTCCTGTCAATCCTAG
TTGGTATAACTGCTACAAACATCACTTTTCTGAATCTATTGGGAAGGGAA
AATTATTTTAGTGAGATAAAATCTTGAACAATGGCCATGTACTAGCCTAG
GATTACATTAATATGTATTTGCTTTGAAAGAAATTATGTTTCATTTAGTA
TTTCCATATAATCTAGAATACTTCAAACGGGTCTATACTTTTTTCTAAAT
TTCCCTTTAGCTATCTACTCCTGGCCTACCCCCATTTATAAAAATTTACC
TTTTTGAACTTTGGCATCCAAATGGGTCCCCCCCCTTGGATCCTTAAAAA
AAAAAAAAATGGTTCCTTTTGTCCAAACAGGGGGGAATTTTTTTTTATTT
TTAACCCCTGGTGTTTTTTCTCTAAAAAATTTATTTTTGCAACC

NCCCCATTTTTNNNNNAATGCATGGAGNCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTATGGGGAGAAGCGTTA
CTAAGAAGTTCAGCCCCTGCCCCCATTGATTTGAGTAACAATAATTGGCT
ATAGCTACAAAGAGAATTAGACCAATCATGGATTCTGGTCAGAAGAATTT
GTGGTTACTCCAATTTTCCATCTCTAAGAAAACAAAACAAAAACAACAAC
AACAACAACAACAAAAAAACTTGGGTCATGAGCTTTATGAATAGCTGTAA
CTTTGAATTTACCTCTAGTAGTTTTATAAAGAGGCAAAGGACACTGGTGA
AAAGAAAGGGGAACCTATACTCCTTATTAATGCAGAAACTTGAAAATATA
ACATCAGACAAAGTGAGTCGCTGACCTGATAAAAAGAAGCAGAATTGGAA
AACACTTTACTGAAACTGAATCCAGTACTATACAAGAAGAGAGAACTGAG
CTGTAGCAATAGGACTTTTAGCTGTCCTGTCTGCATGAACATTGGCACAT
CTTTCAAAGAACCCATGCTAAACAATATCCTTCAGCTTTCAGTGTACAGC
ATGAAAGATGTAACAGTGTGAAGGGTGCTGACACCAGTGTTTAGGAGCGT
AAAGCATTTACAGAGCAGTGGGCCATTGTGAAAACCTAAACCCAACTGGT
GACTGCTGTTCATGTGAAAGTAGCAAAATCTGTTTTGGATTTACTGACTC
TGTGCAAGTCCAAAAATTGACCCAACATAATTGGGGAGGTAAAGAGGTAA
ACATGCCATTCATATTTCTGTGATTCTGGGGAAACATGACTACCGAGACT
ACAATTGGGGCTAGAGAGATTGCTTGATGAATGTGAACACATGCTGTGCT
TCTCTGAGAAGTTCCAATCCTCTTTTGAACCCGGTGCTTCTAGAATAACT
GTAACTTTTTCAGGAACATAAGGTTAAAAAATGGGGGTTAACGGTTTTTT
GCAATACAGAAACTTTTTTGCTTAATTTTCACAACCTTTAATTAGGTAAA
CCAGTTTGGCGAATTTACTGAACGGGGAACTGAAAAATAAAATTTTCTTG
GACTAACAAATAAAAAACCTGGGGAACAAAGGACCCCTTGTAAAACCTTA
TTAACAAACACCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_o02.b1 MSMg01no106_o02.b1 CHROMAT_FILE:
MSMg01no106_o02.b1 PHD_FILE: MSMg01no106_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:56 2005
         (673 letters)



>mm_chr14_94405946_94407018
          Length = 1073

 Score = 1294 bits (669), Expect = 0.0
 Identities = 672/673 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtatctggaatatacctctaggcccatgcgacacctaggaatagaatggtactaaaat 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 tggtatctggaatatacctctaggcccatgtgacacctaggaatagaatggtactaaaat 260

                                                                       
Query: 61  tagtaggtagaaattctaagaagtagaacctgatgatttaggtcattcaggccatgtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtaggtagaaattctaagaagtagaacctgatgatttaggtcattcaggccatgtttt 320

                                                                       
Query: 121 tgaaggttatagagggataacaagccaagaattgcaaatttgccctgcttcatgggcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaggttatagagggataacaagccaagaattgcaaatttgccctgcttcatgggcttt 380

                                                                       
Query: 181 tagagtacaagattaattctatatctctatcatatgctcccaccattgcatgctaactta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagagtacaagattaattctatatctctatcatatgctcccaccattgcatgctaactta 440

                                                                       
Query: 241 ttgtaataagttacacccaccccccagatatgaagctagtaggtaatagacagggacctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtaataagttacacccaccccccagatatgaagctagtaggtaatagacagggacctg 500

                                                                       
Query: 301 tacaaccttagcacatatctatttttccttattataagacgattctagtttgttttactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacaaccttagcacatatctatttttccttattataagacgattctagtttgttttactg 560

                                                                       
Query: 361 agaaatttaactacatagccaagaaatatataacactagcttttatttattgtttgatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaaatttaactacatagccaagaaatatataacactagcttttatttattgtttgatat 620

                                                                       
Query: 421 ttttcatatttattaattggaaataactacatggactttaaatatcgacttttatgcttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttcatatttattaattggaaataactacatggactttaaatatcgacttttatgcttt 680

                                                                       
Query: 481 accaacaattgtaacactagagaagattgcctgtaaggaaaattcatagtttttttttta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accaacaattgtaacactagagaagattgcctgtaaggaaaattcatagtttttttttta 740

                                                                       
Query: 541 agtcaattttaaatgttattttaaagaggaattccaatttacttttgtttgttttttcac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtcaattttaaatgttattttaaagaggaattccaatttacttttgtttgttttttcac 800

                                                                       
Query: 601 catctcaaaataaactctgggtgaattaaaaagtattttcttgataattaatcacaaata 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 catctcaaaataaactctgggtgaattaaaaagtattttcttgataattaatcacaaata 860

                        
Query: 661 gaaacacacagag 673
           |||||||||||||
Sbjct: 861 gaaacacacagag 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no106_o02.g1 MSMg01no106_o02.g1 CHROMAT_FILE:
MSMg01no106_o02.g1 PHD_FILE: MSMg01no106_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:56 2005
         (733 letters)



>mm_chr14_94492100_94493232
          Length = 1133

 Score = 1402 bits (725), Expect = 0.0
 Identities = 731/733 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    agaagcgttactaagaagttcagcccctgcccccattgatttgagtaacaataattggct 60
            ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 1107 agaagcgttactaagaagttcagcccctgcccagattgatttgagtaacaataattggct 1048

                                                                        
Query: 61   atagctacaaagagaattagaccaatcatggattctggtcagaagaatttgtggttactc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 atagctacaaagagaattagaccaatcatggattctggtcagaagaatttgtggttactc 988

                                                                        
Query: 121  caattttccatctctaagaaaacaaaacaaaaacaacaacaacaacaacaacaaaaaaac 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987  caattttccatctctaagaaaacaaaacaaaaacaacaacaacaacaacaacaaaaaaac 928

                                                                        
Query: 181  ttgggtcatgagctttatgaatagctgtaactttgaatttacctctagtagttttataaa 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927  ttgggtcatgagctttatgaatagctgtaactttgaatttacctctagtagttttataaa 868

                                                                        
Query: 241  gaggcaaaggacactggtgaaaagaaaggggaacctatactccttattaatgcagaaact 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867  gaggcaaaggacactggtgaaaagaaaggggaacctatactccttattaatgcagaaact 808

                                                                        
Query: 301  tgaaaatataacatcagacaaagtgagtcgctgacctgataaaaagaagcagaattggaa 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807  tgaaaatataacatcagacaaagtgagtcgctgacctgataaaaagaagcagaattggaa 748

                                                                        
Query: 361  aacactttactgaaactgaatccagtactatacaagaagagagaactgagctgtagcaat 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747  aacactttactgaaactgaatccagtactatacaagaagagagaactgagctgtagcaat 688

                                                                        
Query: 421  aggacttttagctgtcctgtctgcatgaacattggcacatctttcaaagaacccatgcta 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687  aggacttttagctgtcctgtctgcatgaacattggcacatctttcaaagaacccatgcta 628

                                                                        
Query: 481  aacaatatccttcagctttcagtgtacagcatgaaagatgtaacagtgtgaagggtgctg 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627  aacaatatccttcagctttcagtgtacagcatgaaagatgtaacagtgtgaagggtgctg 568

                                                                        
Query: 541  acaccagtgtttaggagcgtaaagcatttacagagcagtgggccattgtgaaaacctaaa 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567  acaccagtgtttaggagcgtaaagcatttacagagcagtgggccattgtgaaaacctaaa 508

                                                                        
Query: 601  cccaactggtgactgctgttcatgtgaaagtagcaaaatctgttttggatttactgactc 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507  cccaactggtgactgctgttcatgtgaaagtagcaaaatctgttttggatttactgactc 448

                                                                        
Query: 661  tgtgcaagtccaaaaattgacccaacataattggggaggtaaagaggtaaacatgccatt 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447  tgtgcaagtccaaaaattgacccaacataattggggaggtaaagaggtaaacatgccatt 388

                         
Query: 721  catatttctgtga 733
            |||||||||||||
Sbjct: 387  catatttctgtga 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 733
Length of database: 1133
Length adjustment: 10
Effective length of query: 723
Effective length of database: 1123
Effective search space:   811929
Effective search space used:   811929
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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