BAC Information

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BAC

Clone NameMSMg01-107C08
Chromosome14 (Build37)
Map Location 22,958,561 - 23,080,296
singlet/doubletdoublet
Overlap gene1700112E06Rik
Upstream geneAdk, Myst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, EG665075
Downstream geneEG435392, LOC665068
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-107C08.T7 (MSMg01no107_c08.b1)MSMg01-107C08.TJ (MSMg01no107_c08.g1)
ACCAG321041AG321042
length1,3221,402
length of high quality
(start - end)
335 (131 - 465)277 (133 - 409)
definitionCHROMAT_FILE: MSMg01no107_c08.b1 PHD_FILE: MSMg01no107_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:36 2005CHROMAT_FILE: MSMg01no107_c08.g1 PHD_FILE: MSMg01no107_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,958,561 - 22,958,888)(23,080,020 - 23,080,296)
sequence
CAATTTTTTGNNGATCATTGGGCGCTATAGACTCCTATAGGGAGAGGATC
CGCGGAATTCTTCATTTGTCCAGTACCCATTAGGATATCCTCCCCATCAT
CCACCTCACTGAGAGCCCGTTTAAAATGCCCTTTTGATTCTGAGAAACTC
AAAGGAGCTTATTGCTTTGAATGTGAACATTTGGCTCCTCCACAAACTTT
TCAGTCATGAGTTTCTATTTCTCCAGAGTTGTCACATGAGGCCTGGGTTG
TATAAAGATCATTATTTATGAAAAAACAAACAAGGGCAGATTTCAACGGT
CATACAACATTTTTATACTATTTCTTAACATGGATTTCAAATACCATGAC
TCATGGAGGCTTTGAGCTCTTGCTTCAGCCAGAGCCTCCAGAAGCAGCTT
GCTTCTTTCTTGTTTTTCCAGTCTGGTAGATAACTCCTTGTCATCCGCCC
AGCTCCCATCATTTTCCCCGACCCGTCCAGGTTAACGTAGCATTCATAAA
TCTAATCCTCTATCCTAGAAAGACCAAGAGATACATGATATATCCCTTGA
GGGATTAAACTACCAGACCATTGGCTGGTACGAGATCCAGTGCTCACATG
GATTCCTATGAGGTAGGCTTTGATTTTAGCTTCCTTAAAAATGTCCTTGG
AAACCTTTCTTTTTACTCTCAAGGTGTGTTCCTTACGTTTTTTAAGAGAA
GACAGTTTGTTAGCCAAGCTGAGTTGGAAATTATTTACTTCATTACAATC
TTCTGTGTTGTTGCAACTGTCTGAAAGTTGACTTCTTGTTTAATTATTGC
CCTAAAAAATATCATATCCTGATTGGGCCTGTGCCCTTGCTTCTCAACTA
TGCTGGCCTGTACTTAATCAATTTTCCTATTGCTTGTTCAAAAACTATGG
ATTATGTTCACTTGTTTTTATTTTTTAAATATTTATTTCTTCTCTTGTTT
TACTCTTTCACAGGTTTAACTCCTTTATCTCCCTTGTAACGTAAAATATT
AACATCCCTTCTTAATCAAAAAAGCCCCCTTTTTTTTTTTTTTTTTTTCC
CCCCCCCCCCCCCCCCCATATATAATAAATATCGGGTGACCCTCTTGGCT
CCCTGAATACCCCTAAAATTCTCACCCTCATGGAAATATATTTCCTCCCA
CCCAAGAATCAATTTCTTATTTTGTTCAAAGGCTCCCTTTCTCTCCAAAT
CTCTCTCTTCAATTATTGTGCCCCTCTCCTAACCCCTATGAGTTGCACAT
CTCTTTATATTACAATCCATTCTCCTTGTAGTCATACATACTCCTCTCAG
TATTATCTATTCGGTATATTAT
CCGGATATTTTNNCCAAGATGTGAGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTAAAGGAAGAGTGGGTTA
AAGAAGTCTTAGACCTGTCCCCTTTGAGGCTCAAATCCTCAGCTCCCTTA
ATGTATTCTAAGATGAGAAGAGACGCCCAAGCTCCCTAAGGCTCCAGGCC
TCTTTAACAGACTTACGATACTACAGCCCTTTCGACCACCGAAGCTCATG
TGACTTAAGTTAAAGATGAACTCAATTTGTAAACAACTCTTGCATTTGGA
AGTTTTATTACTACTGTTGTTGTTGATGTTGTTGTTGTCTTGGCTTCTCT
TCTGCAAACAAAACAAAGCTGGTACCTGTCCAAAAACTCTAACCTCTGGG
ATACCTCCAGATATTTTCTCTTTATACCTTTTGTTGCATGTATGAATTTT
GAGTGTTGGGGAAGTTTTGTGCCCGCCCCTGCTATAGTGCCTATATAGGT
CAAAAAAGGGGGTACGGAAGCCAGCTCTTTTCTTTTATCACATGGACCCT
GGGGACCAAACTCAGGTCATCATGTGCAGCAGCAAGCGCCGTTATCCATT
GACTCATCTCAGTGGTCCAGAGACTTATTCTTCATTTACAGGTAATTAAT
ATCCCTATACATGATTTACTTGTATGATTATCTCAGTCATTTACTAATAT
ATGGTATCACTTTCTATTACTATCCCATAGTTTTAATGTTTATAACGCAT
TACAATCTACCTAAATATCTTTTTCTTTTAACCCGGCATATCTTGTTTTT
ATTAACCGGCCATTCTGTATTATAAATTAGTCATTCTGTCATAATTCTGG
TATTGCTTCTTATAATTTCGCTAGTGCCTGCATTCAGTTTAAACTTATGC
TCTGCTCTCTTTTAATTTTTTCAAATTTTTACTCTTCATTTTCCTACCTA
ATAACTACTCGTGTTTCTTCACATTAAATCTATTCATTTAATGGCCATTT
TTTACACATCACTCATATCTTATTATATGATTATATAACTTATCGTATCC
TGCCTATTAACATGCTCCTCATCTAATCTTTCTACCCTTCTTACTTGAAA
TAGTGAGTCAACTTTTATCATCACTGATTAATACTCAGTGTATTTATCTT
TTTCGGACAAACTCNCTCATTGTCTACTCTTCTCTTCGACTAATCCTTTC
TTTCACACATCTGTATTCCTTTACTTATTATCATCTTTCACTCTACTTCA
TATATATAATTCTCTCCTATCTCATCATATCTTTACATCGCGCGATATAT
TNTATCTTTCATCTAATTCATGTATTAACTCGTACNTTGATCTACATTCT
CTCACTATTATATCTTCTACGTCGTGTGTATATCTCTATCATTATNCTAA
TA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no107_c08.b1 MSMg01no107_c08.b1 CHROMAT_FILE:
MSMg01no107_c08.b1 PHD_FILE: MSMg01no107_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:36 2005
         (335 letters)



>mm_chr14_22958360_22959094
          Length = 735

 Score =  619 bits (320), Expect = 0.0
 Identities = 326/328 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttttgattctgagaaactcaaaggagcttattgctttgaatgtgaacatttggctcctcc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttttgattctgagaaactcaaaggagcttattgctttgaatgtgaacatttggctcctcc 261

                                                                       
Query: 62  acaaacttttcagtcatgagtttctatttctccagagttgtcacatgaggcctgggttgt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 acaaacttttcagtcatgagtttctatttctccagagttgtcacatgaggcctgggttgt 321

                                                                       
Query: 122 ataaagatcattatttatgaaaaaacaaacaagggcagatttcaacggtcatacaacatt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 322 ataaagatcattatttatgaaaaaacaaacaagggcagatttcaacggtcatacagcatt 381

                                                                       
Query: 182 tttatactatttcttaacatggatttcaaataccatgactcatggaggctttgagctctt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tttatactatttcttaacatggatttcaaataccatgactcatggaggctttgagctctt 441

                                                                       
Query: 242 gcttcagccagagcctccagaagcagcttgcttctttcttgtttttccagtctggtagat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gcttcagccagagcctccagaagcagcttgcttctttcttgtttttccagtctggtagat 501

                                       
Query: 302 aactccttgtcatccgcccagctcccat 329
           ||||||||||||||| ||||||||||||
Sbjct: 502 aactccttgtcatccccccagctcccat 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no107_c08.g1 MSMg01no107_c08.g1 CHROMAT_FILE:
MSMg01no107_c08.g1 PHD_FILE: MSMg01no107_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:36 2005
         (277 letters)



>mm_chr14_23079915_23080591
          Length = 677

 Score =  536 bits (277), Expect = e-157
 Identities = 277/277 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatcctcagctcccttaatgtattctaagatgagaagagacgcccaagctccctaaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaatcctcagctcccttaatgtattctaagatgagaagagacgcccaagctccctaaggc 323

                                                                       
Query: 61  tccaggcctctttaacagacttacgatactacagccctttcgaccaccgaagctcatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tccaggcctctttaacagacttacgatactacagccctttcgaccaccgaagctcatgtg 263

                                                                       
Query: 121 acttaagttaaagatgaactcaatttgtaaacaactcttgcatttggaagttttattact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 acttaagttaaagatgaactcaatttgtaaacaactcttgcatttggaagttttattact 203

                                                                       
Query: 181 actgttgttgttgatgttgttgttgtcttggcttctcttctgcaaacaaaacaaagctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 actgttgttgttgatgttgttgttgtcttggcttctcttctgcaaacaaaacaaagctgg 143

                                                
Query: 241 tacctgtccaaaaactctaacctctgggatacctcca 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 142 tacctgtccaaaaactctaacctctgggatacctcca 106


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)