BAC Information

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BAC

Clone NameMSMg01-107C22
Chromosome14 (Build37)
Map Location 114,382,541 - 114,382,658
singlet/doubletsinglet
Overlap genenone
Upstream geneTpm3-rs7, LOC100043510, LOC382947
Downstream geneLOC668791, LOC100043821, LOC100043521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-107C22.T7 (MSMg01no107_c22.b1)MSMg01-107C22.TJ (MSMg01no107_c22.g1)
ACCAG321064
length1,2051,309
length of high quality
(start - end)
---120 (139 - 258)
definitionCHROMAT_FILE: MSMg01no107_c22.b1 PHD_FILE: MSMg01no107_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:42 2005CHROMAT_FILE: MSMg01no107_c22.g1 PHD_FILE: MSMg01no107_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCGGAATTTNNNTCCACCATTGCGCGCTAXXXXXXXXXXXXXXXXXXX
XXXXCGCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACCCCTTCCTGGAAACAAGGGCCCGCCT
GAAAAGTCCTCCTTAAATTCCTCCTCAAAAGAAAAAGGCCCAAAATCTTT
CTTTG
CAATCTATTTTNTCACGCATGTGGCCGTGGGCGCCGTTCGTCGAATTTAG
GTGAACTATATAAGGATGCGCGGCCCTTTAAGGCTCCTCAGNTCCCCACC
AAGCTATCTAAACACCCTTTAAGGCCCCACTTCATATGTAGATTTTAAAT
AGCTCAGAATTTCACATTGTTTTGGGGAAAGCTATTCCAAACTGGTAGCT
CAGTATTTTCAATTTGTCTCAACTTAAGTTGATTAGAGAGTAATTTTCAA
GATGACTTTAAGGACAGATTCTAAGAGGATGCTCTTCCCTACGTCCTCAG
AACCTATAGGAACTTAATTGTGTATTTAGCTAAAATTGCTTTTCTCCTTG
ATTCTATGAATTTGAATTTATCTTTGTTTCTTACTTACTGTTTTTCCATG
TGTTCTTTTTTCTGACTTCATATATCACTGCCTATTATGGAAGTAAACGA
TAGATTTTTTTTTCTCCCCCCCACTTTTTTTTTTAACTGCTCAAAAAAAA
GGGGGTGAATGATTTTTGCGTATTATAGGATAGTTCTGATCCCATTTGTC
ATTAACTTCTGACTTCTCCCATTATCTGACTTCTCATTATCTTCTCGTTT
TGTAGTACATCTGTTCTTCTCATCAGTTTGTTACCTTTCTGGACTTGCTC
TTTTTTATTTTTCTTAAACATAATTTCCTCTTGTACATATTTAACTCTCA
TTTGACATACTTTTTTTAACCTTGTTTTTGTAACTTGCCTTGTCTTTTTA
CTTTTAAACTTCTTACCTTGTTCCTTTTTTTTCTGTGTCCTATATTTTCC
TCTACTTTCCTTCTTCCTATTAATCTTTTCATGTTTCTTCTTCTGTTCTA
ATTCTCTCTTTTTTATCTTTCTCTTTTCCTCTCATCTTTTTTAACTTATT
TATTCTACCCTTCTTCCTTTTTTTTTTTTTCAAATTATCTTATTCCTTTC
TTTTTTCTATTTGTTTATTTTATCTTTTTTTATCTTCTCTTTCTTTTTTT
ATTTCACTATTTTCTAACTTTCTCCCTCTCCTCTTTCTTCTTACCTTTAC
ACCTATCTTTCACCCTCTCTTCCTCCCTTTCTTCTTTCTAACTTTTCCTA
TATTCAATTTTCTACATTTATTCTTCCTTTCCTTACTATCCCTTTTCTTC
TTCACATTCTAATTTTCCTCTCGTTCTTTTTCTCTATTCTCTCATATAAA
CTATCCTCTTTTATACACCTATGTACCCTCCTTTAACTGTTCACTGTCCT
TACTTTCTATTACACCTCTTTATCATCTACTCCACTGCTCTCTTCTAATC
CATGCTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no107_c22.g1 MSMg01no107_c22.g1 CHROMAT_FILE:
MSMg01no107_c22.g1 PHD_FILE: MSMg01no107_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:42 2005
         (120 letters)



>mm_chr14_114382341_114382860
          Length = 520

 Score =  228 bits (118), Expect = 7e-65
 Identities = 118/118 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagattttaaatagctcagaatttcacattgttttggggaaagctattccaaactggtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tagattttaaatagctcagaatttcacattgttttggggaaagctattccaaactggtag 259

                                                                     
Query: 61  ctcagtattttcaatttgtctcaacttaagttgattagagagtaattttcaagatgac 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctcagtattttcaatttgtctcaacttaagttgattagagagtaattttcaagatgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 120
Length of database: 520
Length adjustment: 8
Effective length of query: 112
Effective length of database: 512
Effective search space:    57344
Effective search space used:    57344
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)