Query= MSMg01no109_e21.b1 MSMg01no109_e21.b1 CHROMAT_FILE:
MSMg01no109_e21.b1 PHD_FILE: MSMg01no109_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:28 2005
(647 letters)
>mm_chr14_110657371_110658414
Length = 1044
Score = 1013 bits (524), Expect = 0.0
Identities = 619/664 (93%), Gaps = 24/664 (3%)
Strand = Plus / Plus
Query: 5 gaattctctcccacaccaaatataatcctaaattatattgtatctaaaatcaaattttat 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gaattctctcccacaacaaatataatcctaaattatattgtatctaaaatcaaattttat 243
Query: 65 tataacaatactatgttaaagttcaatacataaaagccaagtttgaaaaacatggatctt 124
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 244 tataacaatactatgttaaagttcaatacataaaagccaagtttgaaaaccatggatgtt 303
Query: 125 ggtctggagagataattcagtgat-----------tactt---------a-ctgggttca 163
||||||||||||||||||||| || ||||| | |||||||||
Sbjct: 304 ggtctggagagataattcagtaattacgtactggctacttttccagaagatctgggttca 363
Query: 164 attcctaacactgatatgacagccaacacctccagataattctagtcccaagatatttga 223
||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 364 attcccagcactgatatgacagccaaca---ccagataattctagtcccaagatatttga 420
Query: 224 cacactctttcagacatatgtatacgtaaaacatcaatgtacattaaaaatattaatatt 283
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 421 cacactctttcagacatatgtatatgtgaaacatcaatgtacattaaaaatattaatatt 480
Query: 284 taaaagtttgaaatataaatattaagatttctaaatgaagctgtttaccactattgtttt 343
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 481 taaaagtttgaaatataaatattaggatttctaaatgaagctgtttaccactattgtttt 540
Query: 344 ataagatattttctaaatttacatttcaaatgttattccctttcttggtttcctctccga 403
|||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 541 ataagatattttcttaatttatgtttcaaatgttattccctttcctggtttcctctccga 600
Query: 404 tctgcctcaccctgcttctataagtgtattcccctacccacccactccctttttcccatc 463
|||| ||||||||||||||||||| || ||||||||||||| ||||||||||||||||||
Sbjct: 601 tctgtctcaccctgcttctataagggtgttcccctacccacacactccctttttcccatc 660
Query: 464 ctggcattcccatattcgggggcatccagatctcacaggaaaaagagcctctcctcccac 523
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctggcattcccatattcggaggcatccagatctcacaggaaaaagagcctctcctcccaa 720
Query: 524 tgatgtctgacaagaccatcatctgctacaaatgcaggtggagccaatggtatcttcatg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 721 tgatgtctgacaagaccatcatctgctacaaatgcaggtggagccaatggtatctccatg 780
Query: 584 ggtattctctgaagatctcagaagatggaaagatctcccatgctcaaggattgacaggat 643
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 781 ggtattctctgaagatctcagaatatggaaagatctcccatgctcaaggattgacaggat 840
Query: 644 taat 647
||||
Sbjct: 841 taat 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1044
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1034
Effective search space: 658658
Effective search space used: 658658
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no109_e21.g1 MSMg01no109_e21.g1 CHROMAT_FILE:
MSMg01no109_e21.g1 PHD_FILE: MSMg01no109_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:28 2005
(590 letters)
>mm_chr14_110739972_110740961
Length = 990
Score = 1071 bits (554), Expect = 0.0
Identities = 581/590 (98%)
Strand = Plus / Minus
Query: 1 agtgagtgcttctgtaactgtccgtttactaggggaagagtatcagaagatgggtgtctt 60
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 756 agtgagtgcttctgtaactgtccgtttactagaggaagaatatcagaagatgggtgtctt 697
Query: 61 atttttctcctctgtgttgggcatgagcatcagagtatgaaagcagggcagcttaagtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 atttttctcctctgtgttgggcatgagcatcagagtatgaaagcagggcagcttaagtga 637
Query: 121 caattagagcaagcccaggtgatctgactagtcactgctatcttggtgggaagggagaaa 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 636 caattagagcaagcccaggtgatctgaccagtcactgctatcttggtgggaagggagaaa 577
Query: 181 ctcaagagacacaggtaaagttcttgagactcttccgactgcaatatgagtcaaggcaaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ctcaagagacacaggtaaagttcttgagactcttccgactgcaatatgagtcaaggcaag 517
Query: 241 caatggtctcaggggttacttcctgcagatatagctgccttggcatgcctgcacttctca 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 516 caatggtctcaggggttacttcctgcagttatagctgccttggcatgcctgcacttctca 457
Query: 301 gtggaacacccagactatcagagcctcagcctctgagcccaatgtattaagcccattctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gtggaacacccagactatcagagcctcagcctctgagcccaatgtattaagcccattctt 397
Query: 361 tggtttcttcagtacttgtggttaatgaatactgttttgcatcttgaagtcaattcctat 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 396 tggtttcttcagtacttgtggttaatgaatactgctttgcatcttgaagtcaattcctat 337
Query: 421 tatttgaagagtttcatataaatgaattttaactcattaaaatgcagctataatctttgg 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tatttgaagattttcatataaatgaattttaactcattaaaatgcagctataatctttgg 277
Query: 481 gtctatattaacagtgccttagtgaatagtcatggacatgcaagaaatagtggacacctc 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 276 gtctatattaacagtgccttagtgaatagtcatggacatgcaagaaatagtgaatacctc 217
Query: 541 agagtggataaagaacatttaaaaataaaaataaaatatacaaaacatgg 590
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 agagtggataaagaacatttaaaaataaaaataaaatatacaaaacatgg 167
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
