BAC Information

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BAC

Clone NameMSMg01-109I01
Chromosome14 (Build37)
Map Location 30,161,641 - 30,161,807
singlet/doubletsinglet
Overlap geneCacna2d3
Upstream geneErc2, LOC100040206, Wnt5a, LOC100040218, Lrtm1, Ppia-ps15
Downstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109I01.T7 (MSMg01no109_i01.b1)MSMg01-109I01.TJ (MSMg01no109_i01.g1)
ACCAG322672AG322673
length741740
length of high quality
(start - end)
167 (83 - 249)33 (194 - 226)
definitionCHROMAT_FILE: MSMg01no109_i01.b1 PHD_FILE: MSMg01no109_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:45 2005CHROMAT_FILE: MSMg01no109_i01.g1 PHD_FILE: MSMg01no109_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTTTCTTTNTTATCTATAATTGCGGCGCTAAACGACTCCTATTTCAAG
AGAGGCGCGGAATTCCACCTATTACCAAATTGTTCTGTAATTTTGTTTTC
CTTTAAATCTGTTTGAAGTCCTTTAGTCACGATCAGCACTGCTGGCCGAG
AGCAATGATATCCTAACTTGTTTTAAAGCAGTAATTCATTTTATTTTTAA
GTGAATGAAAATGGATGCATATATTTATTTACTATGTATGTGTGAATGAG
AGTACTTGCATGCATGGCTACATGTATGCACATGTCACATTATGTATGTG
TGTGTGAGACAGATGACAGTTGGCGGACTTGGTTGTCTTCTGCTATCATG
TGTTGGGTTGATCAAACTCACACAGCCAAGCTTTGCTACACCCGCCTTTA
CCCGCTGAGCAATCTCACTGGCCCTGAAACAAAACTTCCTCGTCTTACTT
CTGCTTTTATTGCCGTGAAGACACTCCATGACCCCTGTCTCTTCTTATAT
CATAAACCAAACTCGTGGTGTCTTCAAGTTCCCCCAGTCTTAGTTCCCTC
TACCATCATGTCCCGGAATTATGTCCCAACTGTCTATTTACACATTGTCT
CTTCTCTATCGAACCCTATTCTTCCTCCATCCTCCGCTCTGTGCGTTATC
ATCATCTCATACTGGCCCCCCCGGATTCACCTTCACCTCTTTCCCTTTCC
CTGATCCTTCTCAACCCCCTTTTTCCCCTCGGCCCCTCCTT
TAGTTCCGNTTGACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTCTCGAAATTCGGCAGTGAAAACAG
TCTCTGTTTTAACAAAACAAAGCAGTCACTGTGTGGCTTATGACACAGAC
GGAGGTAAACGGTGAGCTAGCAAGGCAGATAAGATGGAGGGTGGCGGGTG
TCCTACTGTCTGCTGGCCCACCTACAGGAAAGTCCATCATGGGGGTTATA
GACGCACAGGATTACCAGATACCACTCACAGGATGCATTACGTAGAAATA
GAAGCTGGTATGGTGTTCTTACTATCCTATAGTTTCTACAGGACAGCCCG
CACGCTCATGCCACCTGATATCTTGATTGACCCTCCTCTGCTCCCTTATT
ACTTCCTTGATCGCTCCAATTCTTGATCCTACTACCCACTTCGTACAATT
ATTCTGCTCGTGTCCTCTTATCTCTGTAACTCCTTATGCTTACTTCTTTC
TTATAACCTTTTTACATGTCTCTTTCTCTCCTTATCATTTTCCTACTCTC
TCTGTGTCCCGTCTTTCCGCACCATTTTTTTTGCATCCTGATTATTTCTT
TTATTGCATTTTTCCTTTTTTTCTTCTTCCTCTATTCTTGTTTTACTATT
TCTTTTCCTCACTTTTTGTTTCCCCTCTTTTCTCTTTTTATTTTTTCTCC
CTCGATGGTTTTTTTTTTATTTAACCTTTATTTTTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_i01.b1 MSMg01no109_i01.b1 CHROMAT_FILE:
MSMg01no109_i01.b1 PHD_FILE: MSMg01no109_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:45 2005
         (167 letters)



>mm_chr14_30161441_30162008
          Length = 568

 Score =  308 bits (159), Expect = 2e-88
 Identities = 165/167 (98%), Gaps = 1/167 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgtaattttgttttccttt-aaatctgtttgaagtcctttagtcacgatcagcactg 59
           |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 367 ttctgtaattttgttttcctttaaaatctgtttgaagtcctttagtcacaatcagcactg 308

                                                                       
Query: 60  ctggccgagagcaatgatatcctaacttgttttaaagcagtaattcattttatttttaag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctggccgagagcaatgatatcctaacttgttttaaagcagtaattcattttatttttaag 248

                                                          
Query: 120 tgaatgaaaatggatgcatatatttatttactatgtatgtgtgaatg 166
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgaatgaaaatggatgcatatatttatttactatgtatgtgtgaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 568
Length adjustment: 8
Effective length of query: 159
Effective length of database: 560
Effective search space:    89040
Effective search space used:    89040
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)