BAC Information

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BAC

Clone NameMSMg01-111B08
Chromosome14 (Build37)
Map Location 102,584,136 - 102,584,910
singlet/doubletsinglet
Overlap genenone
Upstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
Downstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111B08.T7 (MSMg01no111_b08.b1)MSMg01-111B08.TJ (MSMg01no111_b08.g1)
ACCAG323843AG323844
length1,1501,146
length of high quality
(start - end)		749 (28 - 776)778 (74 - 851)
definitionCHROMAT_FILE: MSMg01no111_b08.b1 PHD_FILE: MSMg01no111_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:57 2005CHROMAT_FILE: MSMg01no111_b08.g1 PHD_FILE: MSMg01no111_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTCATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTC
TTTGTTCAGCTCTGACCCTTTATTTTTTAATGGGGTTGTTCGATTTTCTG
AAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGCCCCATATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCCGTTGGTGGTCTTTTTG
TCTTGTTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGG
TCCCATTTGTCAATTCTCGATCTTACAGCACATGCCATTGCTGTTCTGTT
CAGGAATTTTCCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTATTTGATCCAC
TTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCAATTCGCATTCT
TCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGT
CTTTCTTCCACTGGATGGTTTTAACTCCCTTGTCAAAGATCAAGTGACCA
TAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTAC
TTGTCTGTTTCTATACCAGTACCATGCTGTTTTTATCACAATTGCTCTGT
AGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCC
TTGAGAAGACTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGATGAATTT
GCAAATTGCTCCTTCTAATTCGTTGAAGAATTGAGTTGGAATTTTGATGG
GGATTGCATTGAATCTGTAGATTGCTTTTGGTAAGATAACCATTTTTACC
ATGTTGATCCTGCCAATCCATGAGCATGGGAGATCTTTCCATCTTCCTGA
AATCTTCTTTAATTTCTTTCTTTAGAAATTTTGAAGTTTTTATCATACAG
AATTCTTTCCCCTCCTTTAGTTTAATTTATCCCCCAGAATATTTTTTTAC
CTTATTTGGGGACTATTGTAAAAAGGCGGGTTTCTTTTCCCCTTACTTTT
CTTTTTCCTATCCTGTTGTTATCTTTTTTTTTTTATTTATAAAAAGTCCT
CTTTATCTTTTGTNCTTAGTCCATATTCTTTTATTTTCCCTCTCTACCTT


NNAAAACATTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCATTCAGTTTCATAAATGCTCACTAAGAGTATCCC
CACCCTCCTTTCCTTTGTTTAATACCTAGGCCATAGGACTGAGAAGTGAG
ACACATCTAAAAATACAAGGACAGTGAAGGTCTTAGATTTATTAAAACTC
ATTAATATTAATAGCAGTTAAGCTTTATTAGGTAATCATTTTCTCCCAGT
GTTTGATGGGAATTATCTTAACTCACCTCTCTTCATTACAATGAATACGC
TGAGACTTGAAGGTATTAAACATTTTCTCAAAGGTTTTTTTTTTCATTTT
AATGTCATTTATCATCATATACTAATTATATGTAATAATAATTCACTATG
ACATTTTCATACATACTCTTCAAGATTTTATAGCTAATAAACGTCGTGAT
GGAATTTAAACTTGTAGTTTCCTAATTATACTAATTGTTTTCCTTGCTAG
CTTTAAAACATATTAAATTTAGATGTGTTAATTGTAGAGTGTTGTCAAAT
CCTGGTAGAAGTGGTTTTCTTTTATATTGACTGGTTTGTTAGGGAGATGG
TTGCCTTCATTGCATAATTCATGTAGTGTCTGTTGAAATAGGCCTTGTCT
TATAGCTAGCCAAGGACGGACTATGGTTTCTAGCACTGACTGGTCATAGT
TAATGTGTGCATGACACTTGGCAGGTACTAGACTCTTTTCCAAGCAGTTC
ATACACATTAGCATCCTTGTCTATTTTGTAGGTGACACACAAATTACCGG
AGATCCAGTACCTCATGAAGGTCATTTGACCCCCAATGACAGAACATGGA
TTTGGCATTAACGTCTGTGTTTCCAGTAAAATGATCAGAACACTAAGAGA
TATTTTTCCCTTTACAAATTTGGAATTGTGAAACCCAAAAAATTTACTGT
TTTTGTAAAAACCTTGAGAACCTTATTATATTTTTAAGAAAACCAATGTT
TGGAAAAACCAAAGGGCCTTGGAATTTGGTTCCCCTTATAAAAAAAAAAT
AAATCCCTTTTCTAAACAAAGGAAAAATATTTGTGGTCCTTTATTGAAAC
CAAAAAATATTTTTTGTGTGTCGTCTGTGGTCTCTGTCTATATACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_b08.g1 MSMg01no111_b08.g1 CHROMAT_FILE:
MSMg01no111_b08.g1 PHD_FILE: MSMg01no111_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:57 2005
         (778 letters)



>mm_chr14_102583936_102585110
          Length = 1175

 Score = 1427 bits (738), Expect = 0.0
 Identities = 767/778 (98%), Gaps = 3/778 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcataaatgctcactaagagtatccccaccctcctttcctttgtttaatacctaggcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcataaatgctcactaagagtatccccaccctcctttcctttgtttaatacctaggcca 260

                                                                       
Query: 61  taggactgagaagtgagacacatctaaaaatacaaggacagtgaaggtcttagatttatt 120
           || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 tatgactgagaagtgagacacatctaagaatacaaggacagtgaaggtcttagatttatt 320

                                                                       
Query: 121 aaaactcattaatattaatagcagttaagctttattaggtaatcattttctcccagtgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaactcattaatattaatagcagttaagctttattaggtaatcattttctcccagtgtt 380

                                                                       
Query: 181 tgatgggaattatcttaactcacctctcttcattacaatgaatacgctgagacttgaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatgggaattatcttaactcacctctcttcattacaatgaatacgctgagacttgaagg 440

                                                                       
Query: 241 tattaaacattttctcaaaggttttttttttcattttaatgtcatttatcatcatatact 300
           ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||
Sbjct: 441 tattaaacattttctcaaaggttttttt---cattttaatgtcatttatcatcatatact 497

                                                                       
Query: 301 aattatatgtaataataattcactatgacattttcatacatactcttcaagattttatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aattatatgtaataataattcactatgacattttcatacatactcttcaagattttatag 557

                                                                       
Query: 361 ctaataaacgtcgtgatggaatttaaacttgtagtttcctaattatactaattgttttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctaataaacgtcgtgatggaatttaaacttgtagtttcctaattatactaattgttttcc 617

                                                                       
Query: 421 ttgctagctttaaaacatattaaatttagatgtgttaattgtagagtgttgtcaaatcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ttgctagctttaaaacatattaaatttagatgtgttaattgtagagtgttgtcaaatcct 677

                                                                       
Query: 481 ggtagaagtggttttcttttatattgactggtttgttagggagatggttgccttcattgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ggtagaagtggttttcttttatattgactggtttgttagggagatggttgccttcattgc 737

                                                                       
Query: 541 ataattcatgtagtgtctgttgaaataggccttgtcttatagctagccaaggacggacta 600
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 738 ataattcatgtagtgtctgttgaaataggccttgtcttatagctagcaaaggaaggacta 797

                                                                       
Query: 601 tggtttctagcactgactggtcatagttaatgtgtgcatgacacttggcaggtactagac 660
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| 
Sbjct: 798 tggtttctagcactgattgatcatagttaatgtgtgcatgacacttggcaggtactagat 857

                                                                       
Query: 661 tcttttccaagcagttcatacacattagcatccttgtctattttgtaggtgacacacaaa 720
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 858 tcttttccaagcagttcatacacattagcatccttttctattttgtaggtgacacacaaa 917

                                                                     
Query: 721 ttaccggagatccagtacctcatgaaggtcatttgacccccaatgacagaacatggat 778
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 ttaccggagatccagtacctcatgaaggtcatttgacccccaatgacagaacatggat 975


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 778
Length of database: 1175
Length adjustment: 10
Effective length of query: 768
Effective length of database: 1165
Effective search space:   894720
Effective search space used:   894720
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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