BAC Information

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BAC

Clone NameMSMg01-111D05
Chromosome14 (Build37)
Map Location 106,935,839 - 106,936,567
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620376, LOC100043469, Spry2, EG621364, LOC212084, Trim52, LOC100043807, LOC100043476, LOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742
Downstream geneLOC668748, LOC668752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111D05.T7 (MSMg01no111_d05.b1)MSMg01-111D05.TJ (MSMg01no111_d05.g1)
ACCAG323933AG323934
length1,1771,229
length of high quality
(start - end)
731 (78 - 808)314 (78 - 391)
definitionCHROMAT_FILE: MSMg01no111_d05.b1 PHD_FILE: MSMg01no111_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:12 2005CHROMAT_FILE: MSMg01no111_d05.g1 PHD_FILE: MSMg01no111_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTCAGTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCA
ATACTGATAAAAGGCATTAAGATAACATGAGAAGACACATATTGAAGAAA
TATTACCCTGAACAGAATAAAAATTTTCAGTCAACCCCATGCTGATATAA
AGGGAAAGATTAAAGGATATTGCTAAAGACAGAAAATTTCAGGAACAGGC
AATTATATACAGTGAGTATAATAAGAATTTAAAAGTTCCTGTTATAATAA
ACATATGGTTTGGCATTTTGAATTTCCACTATAAAAATGTATAACCCTAT
TCAATCATGTTTAGGAGTACTATACTTACTTTTAACATATCTGAAATAAA
TGCCAAATGGCTTGACATATAAGCTACAGCTGCTTTCAGACTTGTATGGG
CAGTGACGACTATCATGGGAACAGAAATTTAGCAAAATTAGCTCATTTGT
GTCTAGGTGATGAAACTGCCATAAAGGTCAGTAGTTAAGGTGAATATTTT
TCCACTTCACCAGTCATAGTAGCAATACAGCTAATTCAATTTGTAAAAAT
GGCATGGGGCCATTTTCCTGCTCAGCACACAGTTACAGTGTGCTCTTTCC
TTAAATACTGCACTTTCTGATATTTTGATTCAATGGCATAGACATTGCTG
TCTTAATTTCTAAAAAAAAATTAATTTGTACAGATATAGTTTGAATACTG
TACTGTTTATGTGAATAGCTTACTAGTCATTAAAATTAAAATAGACAGTC
TATAAAGGAAAGCTGGCATGAATGATGAGCTACTGAACTGTCAGTGTTTG
CATATTGTCACCCTTCTGATCTAACCTGTTAATAGGTTTGGATTTTGGAG
CAAAAGGACACAATGGCCTCCTTTTCCCTCACACCAAAGGGAATGAAAAA
CTAGCAAGGGCAGGGCCATCCATCCGCTGGATGAAAGCTTGTCCCATCCT
TTCTCCTTAATACCGGGGGAGTAAATTTATTAATTCTTAAAAACATTTTT
TACCTAAAATTTGCCTTTCCATCCTGCCCTTTTTCCTTCCTTAACCAAAT
AACCAACCTTTCTCCTTTATGCCCTATAAGCCCCCTTAACCAAATTTCCC
TTCTCACCCTTTGGGGGGGCTTCCCTTCTTAAGGGAATATTTTTTTTTTC
CACATTTCCCCCCCGTCTTTAATCGCC
NNTTACGCATGGTAGCTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTTTAAGCTGGCAGTCTGGAGGGCCAGGAACCAG
AGGCTGCCTAGCACAAAGACCTAGGATAGAACCAAAGACAACTGGCAAAA
AAAATTTCATATAATATTTAGTTATTCTTGAGCCTAGCAAAATTTTTAGA
GAGGCTTCATCTAGCAACTGATGTGAGAAGATGCAGATACATCAAAATGT
TAGGTGGATCTAGGGAGATACTGAAGAAGAGGGGGAGGAAGTTTTTTTTT
TTTTTTTTTTTTTTGAGNCAGAGAGGTCAAGAACATCAGTAGGACATGGC
CACAAAATCAATTAATCAGGACTCTTATGAGTTCACAGAAACTGATTTAA
CTGCATGGGTCTGAGCTAGGTACTCTGCATATAAGTTATGATTGTGTAGC
TTTGCGCCCTTGTGGGATTCCTAACAGTGGGAGTGGAAGCTTACTCTTGC
CATGTTGAACCATGTCTGTACGGTTTAAAGCCTATGCTATCATGGCGTAT
ATTTTTGATGTGTTCTTGCTCGTACTTTATTGTATTTTGTTTTATCGTCC
ATACGGTATATTGGTCTGACATTTTCTTTTTGTTCTCTCTCTCTCTCTCT
CTCTCTCTTCTTCTTCCTCACTGTGTCTGATATGCTACCTTTCCTACTGT
TCTGTTTCTTTCTTTACTGATTCTTCTCCACTGTCTTTTTCCCGTTTTTT
CTTTTTCGTTATTATTTTTTCTTTTTTTTGCCCCACTTTCTCCGCTTTTT
TATTTTCTCGTTTCATTCTTTTTTTCTCTCCTCTTTCCTTTCCCCACGCT
CTTTTTTTTCGCCTTTTTACTCCATCTTCATTCCTTTTTCCCTTTTCCAT
TTTCCTCTCTCTTTCTCATTCCCCTCCTTTCTCATCTTTCCGTTTCTTCT
TTCCTTCCCTCTCTTCTCTATTTCTCCTTTTACTTTTTATTCTCCTTCTT
TTCTCTGCTTTCTTCCTATTTCTTCTTCTTTTTTTTTTATTCTTTCTCTC
ATTTTTTCTCTCTTCTTTTTTCTCTTTCATTCTTCTTCCCTCTTCTTTCT
TCTCTTTCTTTTTTCTCTATCGATCTCCCTCTTTTACTCCCTCTCCTCCT
CTTCTTTTCTCTTTCTTTACTCTTCCTCTCGCTTATCTCCANCCTCTCTC
TTTGCCTCTNTATTGCCTCTCTCTTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_d05.b1 MSMg01no111_d05.b1 CHROMAT_FILE:
MSMg01no111_d05.b1 PHD_FILE: MSMg01no111_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:12 2005
         (731 letters)



>mm_chr14_106935639_106936767
          Length = 1129

 Score = 1344 bits (695), Expect = 0.0
 Identities = 722/731 (98%), Gaps = 2/731 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagaagacacatattgaagaaatattaccctgaacagaataaaaattttcagtcaaccc 60
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 929 tgagaagacacatattgaagaaatatta-gctgaacagaataaaaattttcagtcaaccc 871

                                                                       
Query: 61  catgctgatataaagggaaagattaaaggatattgctaaagacagaaaatttcaggaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 catgctgatataaagggaaagattaaaggatattgctaaagacagaaaatttcaggaaca 811

                                                                       
Query: 121 ggcaattatatacagtgagtataataagaatttaaaagttcctgttataataaacatatg 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 810 ggcaattatatacagtgagtataataagaatttaaaacttcctgttataataaacatatg 751

                                                                       
Query: 181 gtttggcattttgaatttccactataaaaatgtataaccctattcaatcatgtttaggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gtttggcattttgaatttccactataaaaatgtataaccctattcaatcatgtttaggag 691

                                                                       
Query: 241 tactatacttacttttaacatatctgaaataaatgccaaatggcttgacatataagctac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tactatacttacttttaacatatctgaaataaatgccaaatggcttgacatataagctac 631

                                                                       
Query: 301 agctgctttcagacttgtatgggcagtgacgactatcatgggaacagaaatttagcaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 630 agctgctttcagacttgtatgggcagtgacgactatcatgggaacagaaatttagtaaaa 571

                                                                       
Query: 361 ttagctcatttgtgtctaggtgatgaaactgccataaaggtcagtagttaaggtgaatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ttagctcatttgtgtctaggtgatgaaactgccataaaggtcagtagttaaggtgaatat 511

                                                                       
Query: 421 ttttccacttcaccagtcatagtagcaatacagctaattcaatttgtaaaaatggcatgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ttttccacttcaccagtcatagtagcaatacagctaattcaatttgtaaaaatggcatgg 451

                                                                       
Query: 481 ggccattttcctgctcagcacacagttacagtgtgctctttccttaaatactgcactttc 540
           ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 450 ggccattttcctgcttagcacatagttacagtgtgctctttccttaaatactgcactttc 391

                                                                       
Query: 541 tgatattttgattcaatggcatagacattgctgtcttaatttctaaaaaaaaattaattt 600
           ||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 390 tgatattttgattaaatggcatagacattgctgtcttaatttctaaaaataa-ttaattt 332

                                                                       
Query: 601 gtacagatatagtttgaatactgtactgtttatgtgaatagcttactagtcattaaaatt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gtacagatatagtttgaatactgtactgtttatgtgaatagcttactagtcattaaaatt 272

                                                                       
Query: 661 aaaatagacagtctataaaggaaagctggcatgaatgatgagctactgaactgtcagtgt 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aaaatagacagtctataaaggaaagctggcatgaatgatgagctactgaactgtcagtgt 212

                      
Query: 721 ttgcatattgt 731
           |||||||||||
Sbjct: 211 ttgcatattgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 731
Length of database: 1129
Length adjustment: 10
Effective length of query: 721
Effective length of database: 1119
Effective search space:   806799
Effective search space used:   806799
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)