BAC Information

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BAC

Clone NameMSMg01-111G01
Chromosome14 (Build37)
Map Location 99,117,939 - 99,252,667
singlet/doubletdoublet
Overlap genenone
Upstream geneDach1, LOC635593, LOC619716
Downstream geneLOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111G01.T7 (MSMg01no111_g01.b1)MSMg01-111G01.TJ (MSMg01no111_g01.g1)
ACCAG324062AG324063
length1,1461,390
length of high quality
(start - end)		642 (110 - 751)212 (74 - 285)
definitionCHROMAT_FILE: MSMg01no111_g01.b1 PHD_FILE: MSMg01no111_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:36 2005CHROMAT_FILE: MSMg01no111_g01.g1 PHD_FILE: MSMg01no111_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,252,026 - 99,252,667)(99,117,939 - 99,118,150)
sequence
CTATGGCGCTAAGACTCACTAAGGGAGAGGATCCGCGGAATTCATGCTAA
GTATCTCTCCTTATAATACTGGTTACTGATGTTTTCCCCCCATTTCTTCC
TCTCTTGGAGAGAAATTATAAGCATGAAAAGAAAATGGAAAAACCCAGGT
GTTTACATGTTTTGTTGTTAATGTGATTCATAGGCTATTGCCACGATACT
TACATTATTAATAACACTTAGAAGGTATCTATGAAATATTTTCTGATCGA
TTTTACTGTAAAACTTATCATTGAAATGATATCTGTTGCCTTACTTAGTT
GTGGACTGAAATACCGGCATGATTCTAAGTCTCTAGCAAGGTTAGCCCTT
ATATGGCAGGACAGACAAATTGAATCTGAAGAGATTTAATCTCCATGGTT
TCTTTCTTCCTGTAGCCATTCTTTCCCAAAAGCTAATATAAAGCTTTTGG
AGCTTGAATTGTTTTATGTTGTGTATTTGTCTTTGTTTTTTTATAAATTT
AATAGTCTGTAAGTTCACCCTCGCACACTAAACCACTACCCAGTACAGAT
GATATCGGATGTGAGCCATTCCGCTTTGTATCGCTAGTGATGGTTATCAG
AGAAGCTACAAGAGGAATTTCTTTAAATGGTCATATAAATCTCACAAATG
TGAAGCCAGGGCTCTGCTTTGTATGCCAAGCAATGGGAGCCTTGTTTGAA
TGAAAGGGCTTTGGTGATGCTACGCTGATATTGGACCATTGACACTTAAC
CTGGCGACTCTTGAGCCTTCATGAGTTCCCTGATGGAAATAAACTCCGTG
TTTTCATATGACTTTCCTGCTGATCAAATTCATATCACCCAGATCCCTCA
TTATACTCAAAATGAATCTGCAGATAGGAAATAAAAAGGCGGTTTTCCTA
AGCTTAGGAAAAAGGGTGTGACCTAGAACTTATTTTAAAACGAAAATAGT
GCTGCAAATAGTGCTTGGAATCTGACCTCCTTGTTCACATGGGCACCCCG
CAAGCTGGCCGTCCCCCCCCAGTGAACTGGCACCCCCCTGGTATTAACCA
ATGTAATACCCCGGCTCCCAGTTTGGCATTTTTTTTGTTTAAATTCCCCA
AAAACGGAAACCCGAATTTTTTTTACACCCCAAGTTATAAAAGATT

AATGATTGGAGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCTTTATGATGTAGAACTGGATGACCTCACTAGAAAC
ACCCCCTCTTCTTCCATTTTCTCACTTTACAGCCCTTTGAAATCAATGGG
TTTTAACCCATTCAAGGAACCAGGGAAAAAGTGAATGATGGAATCAGTAC
CCAAAGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACTCCAGGGCC
AAAAAGTGGGAGTGGGTGGGTAGGGGAGGGGGAGGTATTTTTTNTTTTTT
TTTTTTTTCTCTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTNTTTNTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCTTTCTTTCTTTTTTTTTT
TTTTTTTTCTTTTTTCCCTTTCTTCTTTTTTTTTTCTTTTCTTTCCCCCC
TTTTTTTTTTCTCCCCCCCCCCTTCCTTTTTCCTTTTTCCTTCTTTTTTT
TTATTTCTTATTTTTTTCCTTTTTCACTTTTTTTTCTCTTTTTTTTCTTT
CTTTTTTCTTTTTTTTCTTTTTTTTCATACATTTTTCCTTTTCTATTTTT
CTTTTCTCTTTTTTTTCTTTCATTTTTTTCTTCTTTTCCATTATCTTTCC
TCTCTTCTTATCATCCATTTTTTCTTTTCATTCTATTTCTTTATTTCCTT
CTTNTTATTTTTACTTTCTTTTTTTCTCCTTTTTATCTTTCTCCTTCTTA
TTTTTTCCTTATTACTCTTTTTTCTCCCTTTTTCTTTTTACTTTTTATCT
CTTCTTTTTCTTCTTTTTATTAAACTTTCTATTTCCTCTTTTTTCTCTAA
ACTTTTCTCATTTTTTTTACTTTTTTTATCACTTTCTTTTTATCTTTCAT
TATCTTCTCTATCCTTCTTCCTCCCTATTTCTCTATTCTTCTTATTTCAT
CTATTCTCTTCTTCCTATTTTTTTTTCTCTTTTTATAATTTTCTTTCTCC
TTTCTATCTCTACTCAATTTATTCTTTCTATCTATTTTTATTTTTACTCA
TTCTATTTTTATTAATTTCCCCCTTCTTCTTTCTCTTCTTCTTTTTATAT
TTTTCTTTCCTCTCTCTCATTTTTTTCTTCATTTATCTATTTTATTTTTA
TTATTTCTCTCATTCTTCTCTTCTTTTCTTTTTCCATCTTCCCTATTCTA
TTCTCTTTTCTCTCCTTTCTTTAATTTTCCTATTTTTCTTCTTTCTCTTT
CTTTACTTTCTCTCTTCTTTCTTTATGTTTCTTTTATTAACCNTTTCCTT
TCTATCTATCCTCTCTCATTTCATCCAAATACTTTATTCCTCTCTCTTTT
ATCTCTTATATTATCTCTTACCTCATTTTCTTATAATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_g01.b1 MSMg01no111_g01.b1 CHROMAT_FILE:
MSMg01no111_g01.b1 PHD_FILE: MSMg01no111_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:36 2005
         (642 letters)



>mm_chr14_99251826_99252867
          Length = 1042

 Score = 1241 bits (642), Expect = 0.0
 Identities = 642/642 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagaaattataagcatgaaaagaaaatggaaaaacccaggtgtttacatgttttgttgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 gagaaattataagcatgaaaagaaaatggaaaaacccaggtgtttacatgttttgttgtt 783

                                                                       
Query: 61  aatgtgattcataggctattgccacgatacttacattattaataacacttagaaggtatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 aatgtgattcataggctattgccacgatacttacattattaataacacttagaaggtatc 723

                                                                       
Query: 121 tatgaaatattttctgatcgattttactgtaaaacttatcattgaaatgatatctgttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tatgaaatattttctgatcgattttactgtaaaacttatcattgaaatgatatctgttgc 663

                                                                       
Query: 181 cttacttagttgtggactgaaataccggcatgattctaagtctctagcaaggttagccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 cttacttagttgtggactgaaataccggcatgattctaagtctctagcaaggttagccct 603

                                                                       
Query: 241 tatatggcaggacagacaaattgaatctgaagagatttaatctccatggtttctttcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tatatggcaggacagacaaattgaatctgaagagatttaatctccatggtttctttcttc 543

                                                                       
Query: 301 ctgtagccattctttcccaaaagctaatataaagcttttggagcttgaattgttttatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ctgtagccattctttcccaaaagctaatataaagcttttggagcttgaattgttttatgt 483

                                                                       
Query: 361 tgtgtatttgtctttgtttttttataaatttaatagtctgtaagttcaccctcgcacact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tgtgtatttgtctttgtttttttataaatttaatagtctgtaagttcaccctcgcacact 423

                                                                       
Query: 421 aaaccactacccagtacagatgatatcggatgtgagccattccgctttgtatcgctagtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aaaccactacccagtacagatgatatcggatgtgagccattccgctttgtatcgctagtg 363

                                                                       
Query: 481 atggttatcagagaagctacaagaggaatttctttaaatggtcatataaatctcacaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 atggttatcagagaagctacaagaggaatttctttaaatggtcatataaatctcacaaat 303

                                                                       
Query: 541 gtgaagccagggctctgctttgtatgccaagcaatgggagccttgtttgaatgaaagggc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gtgaagccagggctctgctttgtatgccaagcaatgggagccttgtttgaatgaaagggc 243

                                                     
Query: 601 tttggtgatgctacgctgatattggaccattgacacttaacc 642
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tttggtgatgctacgctgatattggaccattgacacttaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no111_g01.g1 MSMg01no111_g01.g1 CHROMAT_FILE:
MSMg01no111_g01.g1 PHD_FILE: MSMg01no111_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:37 2005
         (212 letters)



>mm_chr14_99117739_99118350
          Length = 612

 Score =  410 bits (212), Expect = e-119
 Identities = 212/212 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtagaactggatgacctcactagaaacaccccctcttcttccattttctcactttacagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtagaactggatgacctcactagaaacaccccctcttcttccattttctcactttacagc 260

                                                                       
Query: 61  cctttgaaatcaatgggttttaacccattcaaggaaccagggaaaaagtgaatgatggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctttgaaatcaatgggttttaacccattcaaggaaccagggaaaaagtgaatgatggaa 320

                                                                       
Query: 121 tcagtacccaaagacttgcaaactttatatgccccagtacaggggaactccagggccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagtacccaaagacttgcaaactttatatgccccagtacaggggaactccagggccaaa 380

                                           
Query: 181 aagtgggagtgggtgggtaggggagggggagg 212
           ||||||||||||||||||||||||||||||||
Sbjct: 381 aagtgggagtgggtgggtaggggagggggagg 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 612
Length adjustment: 9
Effective length of query: 203
Effective length of database: 603
Effective search space:   122409
Effective search space used:   122409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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