BAC Information

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BAC

Clone NameMSMg01-112O14
Chromosome14 (Build37)
Map Location 123,146,702 - 123,147,004
singlet/doubletsinglet
Overlap genePcca
Upstream geneLOC668843, Phgdhl1, Gpr18, Ebi2, Timm8a2, Tm9sf2, LOC621710, Clybl, 1700108J01Rik, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847
Downstream geneBC006662, 4930594M22Rik, Tmtc4, Vgcnl1, Itgbl1, LOC668700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112O14.T7 (MSMg01no112_o14.b1)MSMg01-112O14.TJ (MSMg01no112_o14.g1)
ACCAG325196AG325197
length756687
length of high quality
(start - end)
308 (45 - 352)431 (76 - 506)
definitionCHROMAT_FILE: MSMg01no112_o14.b1 PHD_FILE: MSMg01no112_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:12 2005CHROMAT_FILE: MSMg01no112_o14.g1 PHD_FILE: MSMg01no112_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGG
AATTCAAACAGTTTCCAGGCTGAGTGTGTTGATAGTTAAATATCTGTGGA
AATGTCAGAACACTGACATCCTGTGCAGGTGATAAAAAATGATTATGAAT
CCGTTTTACATGCGGTTTCATTAAGTAGTAAAGGCAAAGTATATTCTTTC
GTAGAAAGAAAGAGTATGTTAGGACTGGTGTGGTGGTACATGTCTTTAAT
TTCAGGAGTTGGGAGGCAGGGCAGGCACATCTCATGAGTACCAAGCCAAC
CCAGGCTGGACAGTGAGATTCTGTCTTGAGTAGGGTAGTGATAGGGGGTT
GTCCCTTTTTTTTTCTCCTCCCCCTTTCTCTATTTTTGCCTCTTTTCCTT
CCCCTTCCTTATTTTCTTTCCCCCCCTTTTTTCTCCTTCTCTTTTCCTTT
TCCGCCCCCCCTCCTTTCCTTTCTTTTTTTTTCCCCTTCCTTTCCCCTCT
TTCCCCCATTTTCCCTTTTTTTTTTCCTTTTTTCCGTCTGTTATCTCCTT
CCCTTTCCTCCCCCTCTCTCCCTTTTTTTCTTTCCTTTCTCTCATCTCTT
TCTTTTTTCTTTTTTCCCCTCCTCTCCCCCTTACCCTTCTTTTCTTTTCA
CATCCCGTCTTTCCTTCTCTTTATTTTTTTCTCTCCTCTGCCCTTTCTCT
CTCTCTTCGCCTTTTCCCTTTTTCCCTCTCCCTTTTTATCTCTTTTCCCT
TTCTTG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATCAGTTTGTGTCTTCTTTATTGA
TCCTATTTCCATTTTCAGGTCTTAAAAAGATTTTATTCATTTCCTTCTAC
TGTTTCTGTTTTCTTGTGTTTCTTTAATATTTCTTTTATTCTTGTGTTTC
TTTTATTCATTTCCTCTAATGGTTTGTTTTTATTTTCCTGTGTGTTTAAA
CAAATTCATCTTTAAGAACTTCTATCACCATCATAGTCAGTTTTAACATC
TTTTTCTGGTGCTTCAACTGTGTTGGAATATTTGGGGTCTGCTGTAGCTC
TAATGAAGACAGATTGCTCTGGGTGTTTTAATTGTGTTTTTATGCTGTTG
AATAACAATCTGGGTTTAGGATTTTCATAGGTCTGGCTGCTGATTTCTGA
ATTCGTCTTTTTGGGATGATGTTTTGTCCTTTTCTGTTTCTGTTTCTTCT
CTAGACCTGCAGAGTGTGATGGCTATGTTCCTTGGCAGGCTGACTCCAGT
CTCAGACCTGTAAATGACAACCACTTGCAGGCCTGAGACAGGGTACCTTG
GTATTTTATACTTACATAGACTGACAGACACGGCTTATCAGTATGAGTCC
GCAGGTTGTATCATTCCAACTTCATAGTGTGAATATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_o14.b1 MSMg01no112_o14.b1 CHROMAT_FILE:
MSMg01no112_o14.b1 PHD_FILE: MSMg01no112_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:12 2005
         (308 letters)



>mm_chr14_123146497_123147204
          Length = 708

 Score =  551 bits (285), Expect = e-161
 Identities = 299/305 (98%), Gaps = 4/305 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcaaacagtttcca--ggctgagtgtgttgatagttaaatatctgtggaaatgtca 63
           |||||||||||| |  ||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaaacagct--caaaggctgagtgtgttgatagttaaatatctgtggaaatgtca 263

                                                                       
Query: 64  gaacactgacatcctgtgcaggtgataaaaaatgattatgaatccgttttacatgcggtt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaacactgacatcctgtgcaggtgataaaaaatgattatgaatccgttttacatgcggtt 323

                                                                       
Query: 124 tcattaagtagtaaaggcaaagtatattctttcgtagaaagaaagagtatgttaggactg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcattaagtagtaaaggcaaagtatattctttcgtagaaagaaagagtatgttaggactg 383

                                                                       
Query: 184 gtgtggtggtacatgtctttaatttcaggagttgggaggcagggcaggcacatctcatga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgtggtggtacatgtctttaatttcaggagttgggaggcagggcaggcacatctcatga 443

                                                                       
Query: 244 gtaccaagccaacccaggctggacagtgagattctgtcttgagtagggtagtgatagggg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtaccaagccaacccaggctggacagtgagattctgtcttgagtagggtagtgatagggg 503

                
Query: 304 gttgt 308
            ||||
Sbjct: 504 tttgt 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)