BAC Information

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BAC

Clone NameMSMg01-112O20
Chromosome14 (Build37)
Map Location 99,633,059 - 99,728,386
singlet/doubletdoublet
Overlap geneD14Ertd581e, LOC100043395, LOC100043397, Klf5
Upstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3
Downstream geneLOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112O20.T7 (MSMg01no112_o20.b1)MSMg01-112O20.TJ (MSMg01no112_o20.g1)
ACCAG325206AG325207
length718721
length of high quality
(start - end)
512 (46 - 557)437 (77 - 513)
definitionCHROMAT_FILE: MSMg01no112_o20.b1 PHD_FILE: MSMg01no112_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:13 2005CHROMAT_FILE: MSMg01no112_o20.g1 PHD_FILE: MSMg01no112_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,633,059 - 99,633,567)(99,727,950 - 99,728,386)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAGCCGCGGA
ATTCTGAAGCATATCCTGATACTGTTTTCTGACACTTTGCCATATAAAAG
CTATTTGCCTATTGTTTCCCTTTGTAACTGAAGTCTTAGAATATGGAAAG
AGTAACTTTTAGAGCTGGGGTTTCTCTATTATACAGCCCCAGCTGCCCTG
AAACTCAGAGATCATCTGCCTCTACCTCCACCTCCCAAGTGCTGGGGTTA
AAGATGTTTGCCACAACCCACCTGGAATAAGTAACTTTTAATTAAATTTA
CATGGGCAGGGAGGGGGACCCAGAGCTTTGCACATGCTAGGCCGGTGGCA
CTGAGCTCTGGAACCAAGAATTACCTTGAACCCTCATCCTCCTGTCTCCA
CTTCCTCAGGACTATACAAGAGTAATGGTACCTGTAAATACAGATACTCC
TAGACTTAGAGTGGGTTATGTTTCAGTAGATTCACCATATTTTCAAATAT
GCTAAACGAAAATACATTTAAAACAATTTACCAAACATTCAAGGTGGCAA
ACTTTGAATGTTCTAAGAATACTTATACAAAATTATCAAACCTAAAGCCT
GTTCTCTATTACAGTACTGATTATCTCATGCCACGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGCGTGTGCGCGTGTGTGTGCGTGATCTTTTTTCCTTCC
CTTCTCCTTTCCCTCATN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAATACTGTTTTCAGAATAGCTG
CCTTTGCCACCTTTGACTTGGCCACATCCTCTTTGGCACAGTGCTTCTGT
CAAAGCCAGAATTCATTTTCTATTTGATGGGTAGGTAGCAACAGATGATG
CTCTGGGACCCTTTCTCATTGCTGAGCTCTGTTCTTGGTCTTAATGTGAA
TTATCTCTTTAAAATGTCCCAACAATCCTGAAAGAAAAATACTGCTGTTC
AGTGTGTTTGCTGTTTGGTAAGGTACTCCTTCCTTCCATCACTGTTCAAC
ACTCAGGAGGCAAAGGCAGGGGGGATCTGTGTAAGTTTGAGGCCAGCCTG
GTCTATAGAGAGCATTCCTGAACAGTTGGCAGAGAATCCCTGTCTCAAAA
CAAAACAAAACAAATTCTTCAATGAGTTATTAAATAACTATTCCAATGGA
AGGTGAAAACACAGTCTGAAAATAATTGAACCAAGTTATTCCCAGCGGCT
TGGAACAACTTAGCGTCAATAATTCTTGCCCCTGTCACTTCTTGGCTTCT
TAGATTACACCAATTCTTCTTAACTAGTGGATTTAGTCACTAGCCCGCAT
GGACAGGCCCTATAGAGAAGGGACAGAACCGCGAATGTGCAGGACATACA
GGTACTCCTAGTTATTGTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_o20.b1 MSMg01no112_o20.b1 CHROMAT_FILE:
MSMg01no112_o20.b1 PHD_FILE: MSMg01no112_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:13 2005
         (512 letters)



>mm_chr14_99632856_99633767
          Length = 912

 Score =  969 bits (501), Expect = 0.0
 Identities = 507/509 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctgaagcatatcctgatactgttttctgacactttgccatataaaagctatttgc 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctgaagcatatgctgatactgttttctgacactttgccatataaaagctatttgc 263

                                                                       
Query: 64  ctattgtttccctttgtaactgaagtcttagaatatggaaagagtaacttttagagctgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctattgtttccctttgtaactgaagtcttagaatatggaaagagtaacttttagagctgg 323

                                                                       
Query: 124 ggtttctctattatacagccccagctgccctgaaactcagagatcatctgcctctacctc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggtttctctattatacagccccagctgccctgaaactcagagatcatctgcctctacctc 383

                                                                       
Query: 184 cacctcccaagtgctggggttaaagatgtttgccacaacccacctggaataagtaacttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cacctcccaagtgctggggttaaagatgtttgccacaacccacctggaataagtaacttt 443

                                                                       
Query: 244 taattaaatttacatgggcagggagggggacccagagctttgcacatgctaggccggtgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taattaaatttacatgggcagggagggggacccagagctttgcacatgctaggccggtgg 503

                                                                       
Query: 304 cactgagctctggaaccaagaattaccttgaaccctcatcctcctgtctccacttcctca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cactgagctctggaaccaagaattaccttgaaccctcatcctcctgtctccacttcctca 563

                                                                       
Query: 364 ggactatacaagagtaatggtacctgtaaatacagatactcctagacttagagtgggtta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggactatacaagagtaatggtacctgtaaatacagatactcctagacttagagtgggtta 623

                                                                       
Query: 424 tgtttcagtagattcaccatattttcaaatatgctaaacgaaaatacatttaaaacaatt 483
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 624 tgtttcagtagattcaccatatttttaaatatgctaaacgaaaatacatttaaaacaatt 683

                                        
Query: 484 taccaaacattcaaggtggcaaactttga 512
           |||||||||||||||||||||||||||||
Sbjct: 684 taccaaacattcaaggtggcaaactttga 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no112_o20.g1 MSMg01no112_o20.g1 CHROMAT_FILE:
MSMg01no112_o20.g1 PHD_FILE: MSMg01no112_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:13 2005
         (437 letters)



>mm_chr14_99727917_99728753
          Length = 837

 Score =  837 bits (433), Expect = 0.0
 Identities = 436/437 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaatactgttttcagaatagctgcctttgccacctttgacttggccacatcctctttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ccaatactgttttcagaatagctgcctttgccacctttgacttggccacatcctctttgg 411

                                                                       
Query: 61  cacagtgcttctgtcaaagccagaattcattttctatttgatgggtaggtagcaacagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cacagtgcttctgtcaaagccagaattcattttctatttgatgggtaggtagcaacagat 351

                                                                       
Query: 121 gatgctctgggaccctttctcattgctgagctctgttcttggtcttaatgtgaattatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gatgctctgggaccctttctcattgctgagctctgttcttggtcttaatgtgaattatct 291

                                                                       
Query: 181 ctttaaaatgtcccaacaatcctgaaagaaaaatactgctgttcagtgtgtttgctgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ctttaaaatgtcccaacaatcctgaaagaaaaatactgctgttcagtgtgtttgctgttt 231

                                                                       
Query: 241 ggtaaggtactccttccttccatcactgttcaacactcaggaggcaaaggcaggggggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 ggtaaggtactccttccttccatcactgttcaacactcaggaggcaaaggcaggggggat 171

                                                                       
Query: 301 ctgtgtaagtttgaggccagcctggtctatagagagcattcctgaacagttggcagagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ctgtgtaagtttgaggccagcctggtctatagagagcattcctgaacagttggcagagaa 111

                                                                       
Query: 361 tccctgtctcaaaacaaaacaaaacaaattcttcaatgagttattaaataactattccaa 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 accctgtctcaaaacaaaacaaaacaaattcttcaatgagttattaaataactattccaa 51

                            
Query: 421 tggaaggtgaaaacaca 437
           |||||||||||||||||
Sbjct: 50  tggaaggtgaaaacaca 34


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)