BAC Information

Click to search

BAC

Clone NameMSMg01-113I18
Chromosome14 (Build37)
Map Location 67,745,320 - 67,745,649
singlet/doubletsinglet
Overlap genenone
Upstream geneChrna2, Ptk2b, LOC100043676, Trim35, Stmn4, Adra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a
Downstream geneEbf2, EG628416, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113I18.T7 (MSMg01no113_i18.b1)MSMg01-113I18.TJ (MSMg01no113_i18.g1)
ACCAG325657AG325658
length707712
length of high quality
(start - end)
331 (74 - 404)193 (69 - 261)
definitionCHROMAT_FILE: MSMg01no113_i18.b1 PHD_FILE: MSMg01no113_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:00 2005CHROMAT_FILE: MSMg01no113_i18.g1 PHD_FILE: MSMg01no113_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTC
ATTACGGTCTCATCAGTTTGATTCATTTTCAGAGTGCAAAAAATCAGTCA
CCCTTAAAACTCGCTTGAGCTCACACACCCGAGCTGTTTAATTATGCAGA
CTCCTCCTGGCACCAGTTTCCTTCTAGTAATGGGGGTTATTGAATCGACT
TCATACAGCCCCAGCAGAATATCTGTGGACACACCTAGCTTGAAAGCAGG
AAGGCTGTGTGATTTTTATGCGAAGGGTCAAGAGGATGAAAAATGCTTGT
GGAATGAGCAAATGAAAAAAATTCATTTTTAAACTTATTTTTTTTTTAAA
ACATCACATCTGTCTGTCTATTTGTTTATTTATTTTGTGTCCAAGTGGGG
AAGGGTGAATGCCCACGTTAAAGGGCAACGGGGAGGAGTCAGTTCTACCT
TTCCACAGGAGTCCTGGGCCTCGAAATCGAGTTGTTGGAGGAAAACGTCT
TCAACAGATGGGGCATTTCACTGGCCCCAGTTTTTGGAGTTTTCTATTTA
TGCTGATGCCATGTTTATCGGAGTTGACCTGATTATTTGAATGACAGATT
GCGGGGAGGATATATAAGAGGGGGGCAAAACAATAAAAGGGGGGGTCATA
TTTTATAACAATAAAAGGGGTCTGACTCGCGAATTGAGGGCATACGATGC
TCCTACC
ATACAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAGAATGGCCTGGTCTACAGGTGAGTTCCAGG
ACAGCTAGGGCTACGGACAGAAACCCTGACCTGAAAGGGGCTGGAGAGAC
AGCTGAGTGATTAAACAAACTAACTGCTCTTCCAGAGGACACAGGTTCAA
TGCCCAGCACCCACATAGTGGCTGACGAATATCTGTAACCTCAGTTCCAG
GAAGGCCAGAACCTTCATTTGACCTCTGAGACATTGCGCTCACATAGTGC
CCGGACATGCATATAGACAAAACACTCATGCACATAAAATAAAATAAAAT
GGAATAAAATAAAATAAAATGGAATAAAACAAGGGGAAATAAAATAAAAC
AACTAATCACACACACGCGGGCACACATTGAAAAGGTACACGAAGAAAGA
GTGTGCAAACAAAAAGGGGGCAACAAGGTAGAGAGAAGGTTTAGGAGAAA
ACACCTCTTATGTTTGGAGCTAATCCTTGGTAAACTGAAAATCAAGTTCC
TGGTAAGGATCCCCTAGTGAAAAGGACAACTGTCACTCATTGCGACTCAC
CGTGCCGAACACAGTTTTCCCCAATCCGGATACGCCTGATGTAAACTGGG
CCAGTGATATAATGACAAGGCGAACGCTATCTTGGGTGTCAACATTTGCA
AGCCACCTGTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_i18.b1 MSMg01no113_i18.b1 CHROMAT_FILE:
MSMg01no113_i18.b1 PHD_FILE: MSMg01no113_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:00 2005
         (331 letters)



>mm_chr14_67745120_67745850
          Length = 731

 Score =  592 bits (306), Expect = e-173
 Identities = 324/330 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattttcagagtgcaaaaaatcagtcacccttaaaactcgcttgagctcacacacccgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattttcagagtgcaaaaaatcagtcacccttaaaactcgcttgagctcacacacccgag 260

                                                                       
Query: 61  ctgtttaattatgcagactcctcctggcaccagtttccttctagtaatgggggttattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtttaattatgcagactcctcctggcaccagtttccttctagtaatgggggttattga 320

                                                                       
Query: 121 atcgacttcatacagccccagcagaatatctgtggacacacctagcttgaaagcaggaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcgacttcatacagccccagcagaatatctgtggacacacctagcttgaaagcaggaag 380

                                                                       
Query: 181 gctgtgtgatttttatgcgaagggtcaagaggatgaaaaatgcttgtggaatgagcaaat 240
           |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 381 gctgtgtgatttttatgcgaagggtcgagaggatgaaagatgcttgtggaatgagcaaat 440

                                                                       
Query: 241 gaaaaaaattcatttttaaacttattttttttttaaaacatcacatctgtctgtctattt 300
           |||||||||||||||||||||||| |||||||  |||| |||||||||||||||||||||
Sbjct: 441 gaaaaaaattcatttttaaacttaatttttttaaaaaatatcacatctgtctgtctattt 500

                                         
Query: 301 gtttatttattttgtgtccaagtggggaag 330
           ||||||||||||||||||||||||||||||
Sbjct: 501 gtttatttattttgtgtccaagtggggaag 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)