BAC Information

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BAC

Clone NameMSMg01-114E07
Chromosome14 (Build37)
Map Location 47,266,317 - 47,266,669
singlet/doubletsinglet
Overlap genenone
Upstream geneDdhd1, EG637379, LOC666834, LOC100041685, LOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754
Downstream geneCdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114E07.T7 (MSMg01no114_e07.b1)MSMg01-114E07.TJ (MSMg01no114_e07.g1)
ACCAG326191AG326192
length714732
length of high quality
(start - end)
163 (77 - 239)353 (77 - 429)
definitionCHROMAT_FILE: MSMg01no114_e07.b1 PHD_FILE: MSMg01no114_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:55 2005CHROMAT_FILE: MSMg01no114_e07.g1 PHD_FILE: MSMg01no114_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTCACCCTTTCGTATATACCTGTCTGGATAAACAAGACCCACTG
CCTGAAGCTTTTGCCATCAGGACCTTCCTGTAACTACAGTCTGTATCTTC
AAATTGTGACCCAAATAAACCCTTTGTCCTTTAAATGGGTTTTATCAGGA
TATTTCATCATAGGAACAGGAAAAGAAGCTAGGAAAAATGCTCTTTAGCA
CAGTTTCTGATAGCATCCTTGTTCCCTGATACCTCATAAGCCAGGCTTCC
GCTGACTGAATTTTCCTTGGGATATTATTCTTCTATACTTCTGCCAGAGT
GACTCGGGAAGTTTTATTCCGCCCCCCCACCCCCATGTTGCAAACTCTTC
CACATTGTGTTGTTTAGACTTCCCTTGCTGAAACCAAAACTGTTCTTATA
AAGGACAACATTTAAAAAAGGTTGGATTACAGTTTCAAAGGTTTCAAACA
TTATCAACTTGTTGCGTAGCATGGCAGCATCCATATAGACGTGGTATTGC
AACAATGGAAGATTTCTAAAACTTGCTCCCGTGGAAAACAAAAAAGATTG
GTTTTCAAAAGGAACCAAAAAAGGGAAACTGGCAAAATTGGGGCAAAACT
TGAACAAAAAAAAGGGGCGGAAAGAGTTTCAAAAAGGGGGGACCACAATT
GTCAACAAAAACCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTACCCCCACTTTCCGTTCTCT
GCTTCTTGTCTGTAAGAGGAAAAGTGGACATCCACTCAAAAAGTGGCGCC
AACGACAGACTTAGAATAGGCAGAGATATGAATGAGTCGGTGAGGGAGTT
TATGAATTTCTTCATTGACACAATCACTCATGAAATTCAGATTGAGCAGC
ACTGAGTGAAAAATTACCTTGGTGGGATGGTAGCCTCCAAGTACACTGCT
TAGCAAGCGCGCCTGGAGGCCTCTGCACAGAAAAGACTCTCAGATCACAT
TCATAGCCTTGAATCACGTGGATCATTAAATCAATTTAAAACACCCAACG
AGAAGCAAGGGGTGGGGGGAAATATCGGTGCGAACTGTCACACCAGAATC
GAACAACAGCTGGCCGAAGAAACGCACAGCCCAAATTCTGAGTCCCAACC
CCTCCCTCGGACGGAATGAGGCACAGAGATGACGTGTGAACAGGACAGTT
GTCTAGATGAGGGTCACCAGGGTCAACTGCACCTCCCTGCTCTCTCAGAT
AGACCGCCTGCAGGCAGAGCTTGATAATCAGCTTCTGGAGCAGCCTCGGC
ACTATCTGCCCTTTTTAGGCAGAAGATCCAAGGAGCCACATGCATGCTCT
GACGAGATTCTGATTGGCGACCTTACTAATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_e07.g1 MSMg01no114_e07.g1 CHROMAT_FILE:
MSMg01no114_e07.g1 PHD_FILE: MSMg01no114_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:55 2005
         (353 letters)



>mm_chr14_47266117_47266869
          Length = 753

 Score =  675 bits (349), Expect = 0.0
 Identities = 352/353 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttacccccactttccgttctctgcttcttgtctgtaagaggaaaagtggacatccact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttacccccactttccgttctctgcttcttgtctgtaagaggaaaagtggacatccact 260

                                                                       
Query: 61  caaaaagtggcgccaacgacagacttagaataggcagagatatgaatgagtcggtgaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaaagtggcgccaacgacagacttagaataggcagagatatgaatgagtcggtgaggg 320

                                                                       
Query: 121 agtttatgaatttcttcattgacacaatcactcatgaaattcagattgagcagcactgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtttatgaatttcttcattgacacaatcactcatgaaattcagattgagcagcactgag 380

                                                                       
Query: 181 tgaaaaattaccttggtgggatggtagcctccaagtacactgcttagcaagcgcgcctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaaaattaccttggtgggatggtagcctccaagtacactgcttagcaagcgcgcctgg 440

                                                                       
Query: 241 aggcctctgcacagaaaagactctcagatcacattcatagccttgaatcacgtggatcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggcctctgcacagaaaagactctcagatcacattcatagccttgaatcacgtggatcat 500

                                                                
Query: 301 taaatcaatttaaaacacccaacgagaagcaaggggtggggggaaatatcggt 353
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaatcaatttaaaatacccaacgagaagcaaggggtggggggaaatatcggt 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)