BAC Information

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BAC

Clone NameMSMg01-114I17
Chromosome14 (Build37)
Map Location 21,932,918 - 21,933,346
singlet/doubletsinglet
Overlap geneAdk
Upstream geneKcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1
Downstream geneMyst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, 1700112E06Rik, EG665075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114I17.T7 (MSMg01no114_i17.b1)MSMg01-114I17.TJ (MSMg01no114_i17.g1)
ACCAG326399AG326400
length730729
length of high quality
(start - end)
533 (45 - 577)639 (76 - 714)
definitionCHROMAT_FILE: MSMg01no114_i17.b1 PHD_FILE: MSMg01no114_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:15 2005CHROMAT_FILE: MSMg01no114_i17.g1 PHD_FILE: MSMg01no114_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCTTTCATAGAGGTGGACCATTAGGAGGGGAAAGGACAAAGTACA
CGGAAGGTTACTTAATAAGCAGAATGACAGAAGGGGCAGGACTGGAGGCA
GGCAACCTTTGGTCCTACTGTTAACATCTCAGGAGGGAATCATCAAGGAA
TAAAGAACAGGTAGAGTCAGAGTTGGAGACATTCTGGATATTCAAGACAT
TTTATTCACTAAAAAGCATACTGAGTCAGGTATGCTAGTGAACGCCTTTA
ACCTCAGCTCAGGGAGGGTTGTTGATTTTAAGGAGAATCGGGCCTATTAA
CCAAGTTCCAGTCCTGCCAGGGACATACCCTGAGGCCCAATCACCAAACA
TAAGTAAGAAAGCCTAAAAAACGAAAGTATACTGAGCGCGTAAAGGTACA
AAGACAGAGGGAACTTTACCTTTGGCTGGCTCCTGAGATGAGATGGAAGG
AAACAAAATTACAGGACAACCTAGCTCTTCTAATGTAAAATCTGGCCAGA
AACCAGATCAGGGAGGTCAAGAAACCTTCTGGGCTGGCTGTGGGGCAGCG
TGCCTTTATCAGACTGTGGAGGCACACGTTTGTGGGTTCCAGGTCAGCCA
GGGACACACAGTGAGACCCTATCTCACAAACAAAATTTTCAGGAACAGCT
CTGAATCTTTCTGTTTACTTTGTTTTGAAG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGATTTTTATCAG
GAATGGGTGTTGCATTTTGTCAAATGCTTTCTCCGCATCTAATGAGATGA
TCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACGTTGATG
GATTTCCATATATTGAACCATCCCTGCATCCCTGGGATGAAACCTACTTG
GTCAGGATTGTTTTGATGTGTTCTTGGATTCGGTTAGCGAGAACTTTATT
GAGGATTTTTGCATCGATATTCATAAGGGAAATTGGTCTGAAGTTCTCTA
TCTTTGTTGGGCCTTTCTGTGGTTTAGGTATCAGAGTAATTGTGGCTTTA
TAGAATGAGTTGGGTAGAGTACCGTCTGCTTCTATTTTGTGGAATAGTTT
GTGAAGAACTGGGATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCAC
TAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTGATGACT
GCTTCTATTTCTTTAGGGGATATAGGACTGTTTAGATCATTAACCTGATC
TTGATTTAACTTTGTTACCTGGTATCTGTCTAGAAACTTGTCCATTTCAT
CCAGGTTCTCTAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGATG
GTATTTTGGATTTCTTCAGGATCTGTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_i17.b1 MSMg01no114_i17.b1 CHROMAT_FILE:
MSMg01no114_i17.b1 PHD_FILE: MSMg01no114_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:15 2005
         (533 letters)



>mm_chr14_21932918_21933850
          Length = 933

 Score =  727 bits (376), Expect = 0.0
 Identities = 418/432 (96%), Gaps = 5/432 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacctttcatagaggtggaccattaggaggggaaaggacaaagt-acacggaagg 63
           |||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||
Sbjct: 429 gaattcacctttcatagaggtggaccattaggaggggacaggacaaagtga-acggaagg 371

                                                                       
Query: 64  ttacttaataagcagaatgacagaaggggcaggactggaggcaggcaacctttggtccta 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 370 ttacttaataagcagaatgacagaaggggcaggactggaggcaggcaaccttgggtccta 311

                                                                       
Query: 124 ctgttaacatctcaggagggaatcatcaaggaataaagaac-aggtagagtcagagttgg 182
           ||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 310 ctgttaacacctcaggagggaatcatcaaggaataaagaacga-gtagagtcagagttgg 252

                                                                       
Query: 183 agacattctggatattcaagacattttattcactaaaaagcatactgagtcaggtatgct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agacattctggatattcaagacattttattcactaaaaagcatactgagtcaggtatgct 192

                                                                       
Query: 243 agtgaacgcctttaacctcagctcagggagggttgttgattttaaggagaatcgggccta 302
           ||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 191 agtgaacacctttaacctcagctcagggagggtggttgagtttaaggagaatcgggccta 132

                                                                       
Query: 303 ttaaccaagttccagtcctgccagggacataccctgaggcccaatcaccaaacataagta 362
           || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 131 tttaccaagttccagtcctgccagggacataccctgagacccaatcaccaaacataagta 72

                                                                       
Query: 363 agaaagcctaaaaaacgaaagtatactgagcgcgtaaaggtacaaagacagagggaactt 422
           ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  agaaagcct-aaaaacaaaagtatactgagcgcgtaaaggtacaaagacagagggaactt 13

                       
Query: 423 tacctttggctg 434
           ||||||||||||
Sbjct: 12  tacctttggctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)