BAC Information

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BAC

Clone NameMSMg01-114M15
Chromosome14 (Build37)
Map Location 71,869,265 - 71,869,378
singlet/doubletsinglet
Overlap genenone
Upstream geneBmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2, LOC100043132
Downstream geneLOC100043136, LOC668477, LOC668482
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114M15.T7 (MSMg01no114_m15.b1)MSMg01-114M15.TJ (MSMg01no114_m15.g1)
ACCAG326585AG326586
length805740
length of high quality
(start - end)
113 (70 - 182)---
definitionCHROMAT_FILE: MSMg01no114_m15.b1 PHD_FILE: MSMg01no114_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:34 2005CHROMAT_FILE: MSMg01no114_m15.g1 PHD_FILE: MSMg01no114_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATATGATTTCCAAAGAACTGATGCGCAAATACTTTTATGTAAAT
GTCAAAAAAGAAAAGTACACTTCTAGATTAATCCCTTTAAAAATATAAAC
ATAACAGTCATGAACAAAGTGTTTGGAAGTCAAATTCACGAATTTGTAAA
AAAGAATAATGACTGTGGTCAAGTTATTCCCTTCAAGAATATAGTTATAT
ATTTGAAAATCAGCTGATAAAGCGACATAATAACATGAGCCATCTAAACA
GACGACAAAATGAATTGACATAGAAAAGACCTTGAACGTTTTTGCTTTTG
CTTGTTTACTTTGTTGTTGTCTTCCCGTTTTTCGATGCTGCTGTTTGTTG
CAGAGGGTTCATCCCTCCCCCCCACGCAAAAAGCAAAACCGCCCGACCCA
TCTCACCCCTGCTTTACTTCCACATCCCTTCCTACCTATCCCCATCGTCA
CCCCCATATGTTCCCCCCGCCCCCCCTCCCCCTTTTCCGCCCCCTTTCCT
TCTCTTTTCTCCCCTCCCCCTTTCCCAACCACGCCTTACCCCTCATTTTC
CCCCCTCCTTTCTTCCTCCCCCTCTTCGTCTTCCCCCCCCCTCTCTCCCC
TTTTTTTTTTCTTTCCACTCTTCTTCCTTCTATTCTACTCTCCCCGCTCT
CCTCTCACCTCCCCCCCTCTTTCTCTCCTCCCCCCCTTCCTCCCTCCCAT
ATCTCCTCCTTCTTTATCTCTCTTCCTCCCCCTCCCTTTTTCTTCCTCGC
TCCCN
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTGATTGGGAAGGCTTGGCT
GATGCTGTCATCATTGTCACTCTCTTCAGGCCCGCCACTGAGCAGGGTAT
TCCTCTTATCCCAAAAAGGTTGGCATTTAGTACTTGTACTCGGCTCTGAT
CGTAAGCCTATCTGAGCATCCTGAGGTAACCTTTCCAGGACTTCCCAACA
GGACTTATTTTTCTCCTATACTTCCCTCACCCCTAGCCTTGGGTATCTGT
ACTTTCCCAATCCTCTTTCCTTGACTTCTAATATCTTGTTTTCCCAGATG
AAACCTTAATGTTTTTTTCTATTGAGGCTCCATCCTTTACCGTCATCCAT
GGTCACCTTTGTAGTGAAGTGAGAGGAAAGTCAAATACTCTCTCTTTTTC
AACATAAATTACTTCACAAAAATGACCTGAAATACGCATCAAAAATGCAT
AAATTATGTTGTGTCACAAGGCCACAACCATGGTAGGATATTTCGATAAG
GATTTTTAGTCTTTGTTCAGATAAATTATGTGACGAATAATACTACTAGA
GATTTGAAGGGCATATAAATAATTTTGGGATTAATAGATGTTATTAAACT
TTGTGCCTCCTAGACATTTTAAATGCACTTTTGTGACACGCATTTCGTAA
TTTACTATAACTCGCANATTTGAAAACCTCCCATTTTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_m15.b1 MSMg01no114_m15.b1 CHROMAT_FILE:
MSMg01no114_m15.b1 PHD_FILE: MSMg01no114_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:34 2005
         (113 letters)



>mm_chr14_71869065_71869578
          Length = 514

 Score =  205 bits (106), Expect = 7e-58
 Identities = 112/114 (98%), Gaps = 1/114 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaactgatgcgcaaatacttttatgtaaatgtc-aaaaaagaaaagtacacttctagat 59
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 314 agaactgatgcgcaaatacttttatgtaaatgtcaaaaaaagaaaagtacacttctagat 255

                                                                 
Query: 60  taatccctttaaaaatataaacataacagtcatgaacaaagtgtttggaagtca 113
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 254 taatccctttaaaaatataaacataaaagtcatgaacaaagtgtttggaagtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 113
Length of database: 514
Length adjustment: 8
Effective length of query: 105
Effective length of database: 506
Effective search space:    53130
Effective search space used:    53130
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)