BAC Information

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BAC

Clone NameMSMg01-116H21
Chromosome14 (Build37)
Map Location 104,530,330 - 104,530,611
singlet/doubletsinglet
Overlap genenone
Upstream genePhr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420, Rbm26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116H21.T7 (MSMg01no116_h21.b1)MSMg01-116H21.TJ (MSMg01no116_h21.g1)
ACCAG327860AG327861
length716700
length of high quality
(start - end)
591 (53 - 643)281 (73 - 353)
definitionCHROMAT_FILE: MSMg01no116_h21.b1 PHD_FILE: MSMg01no116_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:46 2005CHROMAT_FILE: MSMg01no116_h21.g1 PHD_FILE: MSMg01no116_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTAAGCTCCCGGTCTGCTCAAGGACTTTCTAGGACATTG
GAACACTGGTGAAGGCTTGGCTATGTCACAATTCAATCTTTAAAGGCACT
TATAATAGGATAATACTAAAAAAGAGCACATGGATGCATACACCAGAACT
CGGGAGTGGAATATTAATGTATGGGTTAGAGAGGACGCCAGACTCCAGGA
GGTGAGTTTCTGTGAAACTCTTTTGCCTCCTGAGTAGCTTCTAAGCCTCT
CAGCCTGTCAAGCTGACTCGACCAGAGTGCATGGCACTTGGTATTAAGAA
TCAACAGCCAGGATATCCTAGTATTAGTGAAGGATTCAAGAATTCAATTT
TGTAACAAGTTCTCAGATGATGTTGGTCTGAGACAAAGCCGCTTTCTATA
AAAGAAGGTGATAGGAGTAAAAAATTGAACTTTCCTTTGTCCCCCTTCAT
GTGCACACAATGAAGTCTACTCTCTTAGCAAAGAAGCCTCTCATTGCAGT
GAACAGAATGCAAAGCCTCATGGCTGCCCACAATGTTGAAAATAAGATTC
AGCCAAGGGCCCAGCTCCAATCAAGATCTTTACATCACTTCCTCAAGGCT
CAGAGAACATTGCGGAAGAGGTGACAGATAGAATATAAGAGCTGGCAGTT
AAGAAGACCGGCTGAA
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAACAGGTTATAAAAACAATAGGTAAGAG
GACATGGAATTTGAAGGATTGATGGTTGGGAGGCAAGGAGAGATGGGAAG
AGAGAATTTGAGATGAGAATATGATCAAGACACATTATAAACATGTATGA
AATTTCTAAAGAATAAATGTAAAAATAAATGGAAAAAGTAGCATAGAAAA
TGCCTTTAATATACTTCAATCCTGCTACAACAAAGCTGAATCTGTTTAAA
ACAAACAAACAAACAAAAATCAATTTTAGTAGTATATCTTTCCAAAACCA
GCCTATTTTTATACAGACCAAGCCATAGTCAATAAGCCATCATAAAATGC
TATCACTGAAGTGAGGACCATGCTCTGCTTGGGCCACTCCTCATGGCTTA
TATAGATGGAATTATGCAATGTGTATATTTTGTATGTGATAACTACATAT
GTACTAGGTATGTATTCTGTTGCATCTGGCTTCTTTGGCTCAATTTTATG
TTTTGTGAGATTTAACAAAGTGGTTGCATGTAACTTCATGTCTTCTACCT
ATTTTTACTGACATGTTTCCTTTCTTAAACAAATCACCCAATTTAATACA
TTATGTGTACCACAAAATGAAATTCCCCAGCCTTAGGTTGCGTACCCGCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_h21.g1 MSMg01no116_h21.g1 CHROMAT_FILE:
MSMg01no116_h21.g1 PHD_FILE: MSMg01no116_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:46 2005
         (281 letters)



>mm_chr14_104529985_104530666
          Length = 682

 Score =  538 bits (278), Expect = e-157
 Identities = 281/282 (99%), Gaps = 1/282 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacaggttataaaaacaataggtaagaggacatggaatttgaaggattgatggttgggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aacaggttataaaaacaataggtaagaggacatggaatttgaaggattgatggttgggag 568

                                                                       
Query: 61  gcaaggagagatgggaagagagaatttgagatgagaatatgatcaagacacattataaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gcaaggagagatgggaagagagaatttgagatgagaatatgatcaagacacattataaac 508

                                                                       
Query: 121 atgtatgaaatttctaaagaataaatgtaaaaataaatggaaaaagtagcatag-aaaat 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 507 atgtatgaaatttctaaagaataaatgtaaaaataaatggaaaaagtagcatagaaaaat 448

                                                                       
Query: 180 gcctttaatatacttcaatcctgctacaacaaagctgaatctgtttaaaacaaacaaaca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gcctttaatatacttcaatcctgctacaacaaagctgaatctgtttaaaacaaacaaaca 388

                                                     
Query: 240 aacaaaaatcaattttagtagtatatctttccaaaaccagcc 281
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aacaaaaatcaattttagtagtatatctttccaaaaccagcc 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 682
Length adjustment: 9
Effective length of query: 272
Effective length of database: 673
Effective search space:   183056
Effective search space used:   183056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)