BAC Information

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BAC

Clone NameMSMg01-117M08
Chromosome14 (Build37)
Map Location 100,255,942 - 100,256,319
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623
Downstream geneKlf12, LOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117M08.T7 (MSMg01no117_m08.b1)MSMg01-117M08.TJ (MSMg01no117_m08.g1)
ACCAG328814AG328815
length713709
length of high quality
(start - end)
381 (46 - 426)488 (78 - 565)
definitionCHROMAT_FILE: MSMg01no117_m08.b1 PHD_FILE: MSMg01no117_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:25 2005CHROMAT_FILE: MSMg01no117_m08.g1 PHD_FILE: MSMg01no117_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCACTCATAATTTGCGGCGCTATACGACTCCTATTCGAAGAGGACCGCGG
AATTCAAGTGTCTCGCTCTGCTCCTGTGCTACCAAGCATCCAGGACCATG
AAGACCTGAGTTCCCAAGGTGGGTCCTCGCAGCTAGGGCAAGTGGGAGCA
AGCCATCTCTTACAAGAGTGAGCTGTTTGCTTTCTTCTTTCAATATGAAT
ATATTTTACATAGCTTCGTCATTTCCTGCCTTTTGTGAAGCATTCTGTGG
CATTAAAATCCCTCAGCCCATATGGAGACTAAAATAGGTTTGCATTTCCT
GTATTTTCTTCTTCATTTCTGTCTAAAACTGTAACAATAGTGTTTTATGA
CATGTAACCATACAGATATATCCACCAGTTTGCTGACTGAGTCCTATGAT
GCATCTAGATTTTCTTCTGAATCTGCAGTGAACATCTAACTGTGAGCTGT
TTATTTTCCACCATAATCTTTGACAGTTTCTTGTCTCTTATCTGGTAGGC
TGTGTATTTGTCATAAGCTTGTCACTAAGTTATAGTATCGTATGTTTTTC
TCTGCAGCTCTCTAACTGGTGGTAGTTGTGCACTTTTTATTAATGATTCC
ACAGACATTATTTATGATTCTGGTTACCTTTATACCCCTCCCTGTTTTAA
TCTTGTGGTTATTTTGTGCGCTTCAAGATTACTATCTCACACAATTCGGG
CTATTCTGTTTAC
NCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAACTCTGAGCCCCATT
TTTTAATTATTTGATTTTCTGGAGTCCACCTTCCTGAGTTGTTTATATAT
ATTGGACATTAGTTCCCCTATCTGATTTAAGATATGTAAAGTTACTTTCC
CAATTTGTTGGTGGCATTTTTGTCTTATTGACAGTGTCTTTTGACTTGCA
GAAGCTTTGCAGTTTTATGAGGTCCCATTTGTCGATTCTCGATCTTATAG
CACAAGCCATTGCCGTTCCTTCAGGAATTTATTCCCTGTACCCATATCTT
CGAGGTTTTTCCCTACTGTCTCCTCTATAAGTTTCAGTGTCTCTAGTTTT
ATGTGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACAAAGAGATAG
GTATGGATCAATTTGCATTCTTCTACATGATAACCACCAGTTGTGCCAGC
ACCATTTGTTGAAAATGCTGTCTTTTTTCTACTGGATGTTTTTAGCTCCA
TTGTCAGAGATCAAGTGACCATAGGCGTGTGGCTTCATTTCTGGGTCTTC
AATTCAATTTTATTGGCGTACTTGTCTGTCGCTTTACCAGTACCATGTAG
TTTTTACCACCATTGCTCCATAGTACAGTTTTAGGTCAGGTATGGTGATT
CCACCATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_m08.b1 MSMg01no117_m08.b1 CHROMAT_FILE:
MSMg01no117_m08.b1 PHD_FILE: MSMg01no117_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:25 2005
         (381 letters)



>mm_chr14_100255738_100256519
          Length = 782

 Score =  654 bits (338), Expect = 0.0
 Identities = 368/378 (97%), Gaps = 1/378 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattca-agtgtctcgctctgctcctgtgctaccaagcatccaggaccatgaagacctg 63
           ||||||| |||| || ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 582 gaattcacagtggcttgctctgctcctgtgccaccaagcatccaggaccatgaagacctg 523

                                                                       
Query: 64  agttcccaaggtgggtcctcgcagctagggcaagtgggagcaagccatctcttacaagag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 agttcccaaggtgggtcctcgcagctagggcaagtgggagcaagccatctcttacaagag 463

                                                                       
Query: 124 tgagctgtttgctttcttctttcaatatgaatatattttacatagcttcgtcatttcctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tgagctgtttgctttcttctttcaatatgaatatattttacatagcttcgtcatttcctg 403

                                                                       
Query: 184 ccttttgtgaagcattctgtggcattaaaatccctcagcccatatggagactaaaatagg 243
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 402 ccttttgtgaagcattctgtggcattaaaatccctcagcccagatggagactaaaatagg 343

                                                                       
Query: 244 tttgcatttcctgtattttcttcttcatttctgtctaaaactgtaacaatagtgttttat 303
           |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 342 tttgcatttcctgttttttcttcttcatttctgtctaaagctgtaacaatagtgttttat 283

                                                                       
Query: 304 gacatgtaaccatacagatatatccaccagtttgctgactgagtcctatgatgcatctag 363
           ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 282 gacgtgtaaccatacagatatatccaccagtttgctgactgcgtcctatgatgcatctag 223

                             
Query: 364 attttcttctgaatctgc 381
           |||||||||||| |||||
Sbjct: 222 attttcttctgagtctgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 782
Length adjustment: 9
Effective length of query: 372
Effective length of database: 773
Effective search space:   287556
Effective search space used:   287556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)