BAC Information

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BAC

Clone NameMSMg01-117M17
Chromosome14 (Build37)
Map Location 21,375,700 - 21,375,942
singlet/doubletsinglet
Overlap geneUsp54
Upstream geneLOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb
Downstream geneMyoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1, Adk, Myst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117M17.T7 (MSMg01no117_m17.b1)MSMg01-117M17.TJ (MSMg01no117_m17.g1)
ACCAG328831AG328832
length700698
length of high quality
(start - end)
222 (143 - 364)243 (81 - 323)
definitionCHROMAT_FILE: MSMg01no117_m17.b1 PHD_FILE: MSMg01no117_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:27 2005CHROMAT_FILE: MSMg01no117_m17.g1 PHD_FILE: MSMg01no117_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
CGCGGAATTCCAGGCCTTTCAGTGCTACATAATAAGACCTTGTCTCAAAT
ACACACTCACTTACACACACACACACACACACACACACACACACATACAC
ACTCTCTGAAGAGATGGTGAGATGACTCAGTGGTTAAGAACACTTGCTGC
TCTTGCAGAGGATCCAGGTTCAGTCCCCAGCACACACAAGGTGGCTCTCA
ACCACCAGTAACTCCAGTGCCAGGGCATCTGAACCCTCTTCTCACCTCTA
TGGGCACTAGGCATGTATTTGGTACTCATATATACATGCAGGCAAAACAG
TCATAATATAAAACATATTATAGATTTTTGACAAATCTTTTAAAAGACAC
ACAAGACTAACAAAAACTTGTAAACCAGACAGACCCGGTCAGCATCCGCT
CCCTAAATGGTCTCTTTTAGAATATACTCAGCTGTGGGGGATGCTTCCCT
TTCCCAGTCCAGAAAGCCCTCATTTCCTCTTTCTATTGATTCTTCTCTAC
CTCCTGGATAAGGTGCCCGGTAGAGCTCATGCCTGAACCTGGGCATAAAG
ATCTTCGTCCCATGGAATGTGATGTTGGATGACCTGTCCCTTCTTACTAA
CCGAGGCTCCCAGATGCTCTAGCTACTGATAATGCTGTTTGTATGAATTT

NTTTTCCGATGAAGTGNGAGCCTGGTGGCGCCTGGCTCCAAAATAGAGGT
GAACTATATAAGGTTCCGCGAAATTCAGTGCAGAGGCATGGTCCTTGAAT
CTATAAACGCCAAATTTCAGAATATGGATAAATTCCTATAGGTCACAAAG
ATCAAAACTACTGAAGACATTTCCAGGAAAGGAGCTGTAAGAACAGTCAG
TTGAAGATCGTCATCCGTCAACATTTCTCCTTTATGAATAAAATGAGCTT
TGTTTTCAGAATCAAGCCTAATACTTGTAATCTATAAAGAAAACTATGTG
ACAGAGTGATCTTCTCTAACATATTGTGGTAAGAAAGGAAATTAATCTCT
AGTTCAGAATTTATATGATCATAGCTATTGTATATCAAACCTTCTTCCTT
TGCTGTAATAGGGAAATGAGTTGCAACAGTTGATTGAGATGGTGTTTTAA
CCAGAATTGAAACTCCTATCTTTCATGGTTAAGCACAGATATTTTCTTAG
CTTTTAATACCCTCCCACTTTCTCTCTCTGAGCAGAATCTCTTTAGAAAT
ATTATTCATGTGTAACATCCTGTTATACCAACTTACTCCTTAGCTTATTA
CCATCCCTTAAATTATAATCAAAAATCAATACCGCTTCTGAACTGGATAT
GCGAAGCCCCACCTGGCTTATGAAAAAGAATCGGCCCTTGACCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_m17.g1 MSMg01no117_m17.g1 CHROMAT_FILE:
MSMg01no117_m17.g1 PHD_FILE: MSMg01no117_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:27 2005
         (243 letters)



>mm_chr14_21375500_21376142
          Length = 643

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaggcatggtccttgaatctataaacgccaaatttcagaatatggataaattcctata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaggcatggtccttgaatctataaacgccaaatttcagaatatggataaattcctata 260

                                                                       
Query: 61  ggtcacaaagatcaaaactactgaagacatttccaggaaaggagctgtaagaacagtcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcacaaagatcaaaactactgaagacatttccaggaaaggagctgtaagaacagtcag 320

                                                                       
Query: 121 ttgaagatcgtcatccgtcaacatttctcctttatgaataaaatgagctttgttttcaga 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaagatcgtcatccgtcaacatttctcctttatgaataaaatgagctttgttttcaga 380

                                                                       
Query: 181 atcaagcctaatacttgtaatctataaagaaaactatgtgacagagtgatcttctctaac 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaagcccaatacttgtaatctataaagaaaactatgtgacagagtgatcttctctaac 440

              
Query: 241 ata 243
           |||
Sbjct: 441 ata 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)