BAC Information

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BAC

Clone NameMSMg01-118A16
Chromosome14 (Build37)
Map Location 54,539,706 - 54,540,102
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777
Downstream geneA630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118A16.T7 (MSMg01no118_a16.b1)MSMg01-118A16.TJ (MSMg01no118_a16.g1)
ACCAG329018AG329019
length665696
length of high quality
(start - end)
488 (47 - 534)236 (127 - 362)
definitionCHROMAT_FILE: MSMg01no118_a16.b1 PHD_FILE: MSMg01no118_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:46 2005CHROMAT_FILE: MSMg01no118_a16.g1 PHD_FILE: MSMg01no118_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACCTATTCGANAGGATCCGCGGAATTCTGGGTATACTCAAGACATGGCA
AGAATCCAGGGGCAAGAACCAAAGCAGAGGCTGTGCAGGAGCACCCCTAC
TGGCTTGCTATCAGGATACTTGCCTGATTCCTTAGAGCATCTAGGGCCAG
CAGGGTGGTACTACCTACAGTGAGCCAGACCCTCTCACATCCACCAATAA
TCGAGAATATATAGCACAGGCTAGTCTGGTGGGGAAATTGTCTCAGCTTA
GGTTTCATCTTCCCAAATGACCCTAGCTTATGCCAAATTGACTTATCACT
AGCCAGCACACATGGAATAATTAAAAAAATAATTTTTGTTGATTCTTTGA
GAATTTCATACAATGTATCCACCCTTTCCCTTCTCCCCCAAGATCTATCT
CTCCTACCCTATTCCCCCTGCATCTCTGCATACCATACAAAACCTTCTCA
ATATATTCACCCTCCTCTGGCTCCTCCTAGATCCACACCCTCTTCCTCTA
TCCACCCAACTTTGTGTTCCTTCCCACCCCCTTTAAATACATCAAGAACA
GTTGGTGATTTTCATATACTCACACACCTATGGACTTCCACTGAAACCTG
GTCAATTCCGCTGGGACCTCATCCTTAAAGAAAACAATACTTCCTTCTTC
CACTTTTCCAGCAGT
CACGATGATGNTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTGAAACTAGATGTTCCCTGATGT
AATGATTCTTAAACAATTATAAACCGAGGTATAGCACACACAGCAGTCCT
AATGGCCCAGGTGCATGCTGTGTGTTCTCATCTTGGACACAATGGTAGTT
CCAGATTAATGCTTGACTTGCAAAGAAAGTATGAAGAAATTATTAGAAAA
TGAAATAGAGCCAACACTGGGACCCCAAGAAAGAAAAAAAATTATTGAAG
TTATAAAATAAGATTTGCACAACATCTGAGAGTGGTTCCTGGATACGCAA
GTATAGAATATGTATATTATTACCCCACGCAAAACTAAGACAAAACACTG
GAACTCTTAGGAGAGTCATTGTGTGCAATGCGCAGAAGTAGAAAGCTAGT
GGAACTACTGAGTTAAGGGTTAACTTGATTCTTTCTGACCATTACATGGC
AGCTTTGCCCATGTCATTTATCATTAGAGCTTCACAAGAAAATGCAAATA
GCTGGCCTTGGAGATCTGAGCTCTGAAGTATAACAAGTCAAAGTTAAAGT
TTAAATAACGATGTTTGCAATTATTATTACTTTGGCTACCGGCCTGGGAA
TAAGAAATTTGAAACTTTGGTGAACAATTGCCATTCTTGATCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_a16.b1 MSMg01no118_a16.b1 CHROMAT_FILE:
MSMg01no118_a16.b1 PHD_FILE: MSMg01no118_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:46 2005
         (488 letters)



>mm_chr14_54539215_54540102
          Length = 888

 Score =  698 bits (361), Expect = 0.0
 Identities = 388/397 (97%)
 Strand = Plus / Minus

                                                                       
Query: 88  agagcatctagggccagcagggtggtactacctacagtgagccagaccctctcacatcca 147
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 agagcatctagggccagcagggtggtactacctacagtgagccagaccctctcacatcca 829

                                                                       
Query: 148 ccaataatcgagaatatatagcacaggctagtctggtggggaaattgtctcagcttaggt 207
           |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 828 ccaacaatcgagaatatatagcacaggctagtctggtggggaaattgtctcagtttaggt 769

                                                                       
Query: 208 ttcatcttcccaaatgaccctagcttatgccaaattgacttatcactagccagcacacat 267
           ||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||
Sbjct: 768 ttcatcttcccaaatgaccctagcttatgtcaaattgacataacactagccagcacacat 709

                                                                       
Query: 268 ggaataattaaaaaaataatttttgttgattctttgagaatttcatacaatgtatccacc 327
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ggaatacttaaaaaaataatttttgttgattctttgagaatttcatacaatgtatccacc 649

                                                                       
Query: 328 ctttcccttctcccccaagatctatctctcctaccctattccccctgcatctctgcatac 387
           ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 cttccccttctccctcaagatctatctctcctaccctattccccctgcatctctgcatac 589

                                                                       
Query: 388 catacaaaaccttctcaatatattcaccctcctctggctcctcctagatccacaccctct 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 catacaaaaccttctcaatatattcaccctcctctggctcctcctagatccacaccctct 529

                                                
Query: 448 tcctctatccacccaactttgtgttccttcccacccc 484
           ||||| |||||||||||||||||||||||||||||||
Sbjct: 528 tcctccatccacccaactttgtgttccttcccacccc 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)