BAC Information

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BAC

Clone NameMSMg01-118C23
Chromosome14 (Build37)
Map Location 98,293,903 - 98,374,493
singlet/doubletdoublet
Overlap geneDach1
Upstream geneLOC668654, EG668659
Downstream geneLOC635593, LOC619716
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118C23.T7 (MSMg01no118_c23.b1)MSMg01-118C23.TJ (MSMg01no118_c23.g1)
ACCAG329126AG329127
length713716
length of high quality
(start - end)		670 (42 - 711)635 (74 - 708)
definitionCHROMAT_FILE: MSMg01no118_c23.b1 PHD_FILE: MSMg01no118_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:57 2005CHROMAT_FILE: MSMg01no118_c23.g1 PHD_FILE: MSMg01no118_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,373,827 - 98,374,493)(98,293,903 - 98,294,537)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAATGTAAAAGTACACAGCATATCAAACATTTGGAAGTCATCTTGATGTC
TTTGAAACCAAAGATCAAAGATTGGGCTTTTCAAGTTAATGAGCAAACAA
ACAGATCAGAGAAAGGATTTGACAGCAATATGTCTTCTTTATTGATATTT
ATAATCTACAGTTGTAATCTTCTACTTATAACTAAGGGCACTAACTTATT
TGAAATAAATATAATTAGATCTTATTCTTTTTTTAAAAGGGTGATCAGGA
GAGCTTAATGGCATTTGAAAGAATTTAAAGGCTATTTAACAAAAGTTGAA
AGCAGAAAATAATGGCTTTCTTTGTAAAGTAAGAGGATGTAGTCACACAG
TCACAATGCTTGCTTCCCTTCCAAAAGTTAGACCCATGGTATTGCATTTG
AAACACCAAGGGGCTTCATATCAAGACAGCACCCAGATTTTGGAATCAGT
GATTATATAATAAAATTAATCCATGTGGATGGTCAAATCAAAACGTGCTT
AGGAAGGTAAACGGCTACATTCTAAGAACTTCGATAGTGGTTTAGCATGT
TTAGGGAATGGAATCAAGGAGTTAATTATTTCTTACTGTAAGAAGTTATG
TTTTTTTATTCATTCATCTGCTCACCTTGTTTTCTGTCTTCTTATATTTA
TTATTTTCAATGA

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTAGTATTATTCTGCTGAATCGACAC
AGTAATAAAATGCCCTCTACACACTTATCTCTAATCCCATAGATTAGTGC
ATCACTCAACCGTCAACAGAGAGACTCTTTTAATGCAGTAGATGGTGATT
AATACAGAGACTCACAACCAGTCAATGTGCTGAAAATTAGAGATTATAGA
GTCCTCCATCCTAAACGGGACATTTATATCACAACCTCTTCCACCAAGAC
TCAGGAATCATCAATGAAGAGGGAAAGTAAGTGTTGTAAGAGTCAGAGGT
AGTGGACATGACCATACAGTTACACAAGTAGACTTACTGTGACTTCAAAT
GCATTGTCAAGATAGACAGAAAATGAAGATAGTCAAAATCCAAGCATGGA
TCGAAAAGAACTAAAAAAATCCTAACCTTAGGAATGTGGGTCTCTAAAGC
CTACCCATACTCCAGTTAATGGCCCTAAACACTGCATATAGATGTAGCAC
TGAATGAACTTTTGGATATGTAAAATTAAAAAGAAAATACATGAATTTGG
GGTGAAGAGGCAGTAGGGAATGAGTATTTTACACAAATGCATTATATGAA
TATAATAATAAAAACAAACATACTTTAAGAAGGTAAAAAGATGCCATTTG
TAACTGAAGGATGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_c23.b1 MSMg01no118_c23.b1 CHROMAT_FILE:
MSMg01no118_c23.b1 PHD_FILE: MSMg01no118_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:57 2005
         (670 letters)



>mm_chr14_98373624_98374693
          Length = 1070

 Score = 1282 bits (663), Expect = 0.0
 Identities = 666/667 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaatgtaaaagtacacagcatatcaaacatttggaagtcatcttgatgtctttg 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 ggaattcaatgtaaaagtagacagcatatcaaacatttggaagtcatcttgatgtctttg 811

                                                                       
Query: 64  aaaccaaagatcaaagattgggcttttcaagttaatgagcaaacaaacagatcagagaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 aaaccaaagatcaaagattgggcttttcaagttaatgagcaaacaaacagatcagagaaa 751

                                                                       
Query: 124 ggatttgacagcaatatgtcttctttattgatatttataatctacagttgtaatcttcta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ggatttgacagcaatatgtcttctttattgatatttataatctacagttgtaatcttcta 691

                                                                       
Query: 184 cttataactaagggcactaacttatttgaaataaatataattagatcttattcttttttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 cttataactaagggcactaacttatttgaaataaatataattagatcttattcttttttt 631

                                                                       
Query: 244 aaaagggtgatcaggagagcttaatggcatttgaaagaatttaaaggctatttaacaaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aaaagggtgatcaggagagcttaatggcatttgaaagaatttaaaggctatttaacaaaa 571

                                                                       
Query: 304 gttgaaagcagaaaataatggctttctttgtaaagtaagaggatgtagtcacacagtcac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gttgaaagcagaaaataatggctttctttgtaaagtaagaggatgtagtcacacagtcac 511

                                                                       
Query: 364 aatgcttgcttcccttccaaaagttagacccatggtattgcatttgaaacaccaaggggc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aatgcttgcttcccttccaaaagttagacccatggtattgcatttgaaacaccaaggggc 451

                                                                       
Query: 424 ttcatatcaagacagcacccagattttggaatcagtgattatataataaaattaatccat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ttcatatcaagacagcacccagattttggaatcagtgattatataataaaattaatccat 391

                                                                       
Query: 484 gtggatggtcaaatcaaaacgtgcttaggaaggtaaacggctacattctaagaacttcga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gtggatggtcaaatcaaaacgtgcttaggaaggtaaacggctacattctaagaacttcga 331

                                                                       
Query: 544 tagtggtttagcatgtttagggaatggaatcaaggagttaattatttcttactgtaagaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tagtggtttagcatgtttagggaatggaatcaaggagttaattatttcttactgtaagaa 271

                                                                       
Query: 604 gttatgtttttttattcattcatctgctcaccttgttttctgtcttcttatatttattat 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gttatgtttttttattcattcatctgctcaccttgttttctgtcttcttatatttattat 211

                  
Query: 664 tttcaat 670
           |||||||
Sbjct: 210 tttcaat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no118_c23.g1 MSMg01no118_c23.g1 CHROMAT_FILE:
MSMg01no118_c23.g1 PHD_FILE: MSMg01no118_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:57 2005
         (635 letters)



>mm_chr14_98293703_98294737
          Length = 1035

 Score = 1228 bits (635), Expect = 0.0
 Identities = 635/635 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagtattattctgctgaatcgacacagtaataaaatgccctctacacacttatctcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtagtattattctgctgaatcgacacagtaataaaatgccctctacacacttatctcta 260

                                                                       
Query: 61  atcccatagattagtgcatcactcaaccgtcaacagagagactcttttaatgcagtagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcccatagattagtgcatcactcaaccgtcaacagagagactcttttaatgcagtagat 320

                                                                       
Query: 121 ggtgattaatacagagactcacaaccagtcaatgtgctgaaaattagagattatagagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgattaatacagagactcacaaccagtcaatgtgctgaaaattagagattatagagtc 380

                                                                       
Query: 181 ctccatcctaaacgggacatttatatcacaacctcttccaccaagactcaggaatcatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccatcctaaacgggacatttatatcacaacctcttccaccaagactcaggaatcatca 440

                                                                       
Query: 241 atgaagagggaaagtaagtgttgtaagagtcagaggtagtggacatgaccatacagttac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgaagagggaaagtaagtgttgtaagagtcagaggtagtggacatgaccatacagttac 500

                                                                       
Query: 301 acaagtagacttactgtgacttcaaatgcattgtcaagatagacagaaaatgaagatagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaagtagacttactgtgacttcaaatgcattgtcaagatagacagaaaatgaagatagt 560

                                                                       
Query: 361 caaaatccaagcatggatcgaaaagaactaaaaaaatcctaaccttaggaatgtgggtct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaaatccaagcatggatcgaaaagaactaaaaaaatcctaaccttaggaatgtgggtct 620

                                                                       
Query: 421 ctaaagcctacccatactccagttaatggccctaaacactgcatatagatgtagcactga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaaagcctacccatactccagttaatggccctaaacactgcatatagatgtagcactga 680

                                                                       
Query: 481 atgaacttttggatatgtaaaattaaaaagaaaatacatgaatttggggtgaagaggcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgaacttttggatatgtaaaattaaaaagaaaatacatgaatttggggtgaagaggcag 740

                                                                       
Query: 541 tagggaatgagtattttacacaaatgcattatatgaatataataataaaaacaaacatac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagggaatgagtattttacacaaatgcattatatgaatataataataaaaacaaacatac 800

                                              
Query: 601 tttaagaaggtaaaaagatgccatttgtaactgaa 635
           |||||||||||||||||||||||||||||||||||
Sbjct: 801 tttaagaaggtaaaaagatgccatttgtaactgaa 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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