BAC Information

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BAC

Clone NameMSMg01-118F10
Chromosome14 (Build37)
Map Location 29,289,809 - 29,289,995
singlet/doubletsinglet
Overlap geneErc2
Upstream geneCcdc66, LOC665370, LOC100040206
Downstream geneWnt5a, LOC100040218, Cacna2d3, Lrtm1, Ppia-ps15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118F10.T7 (MSMg01no118_f10.b1)MSMg01-118F10.TJ (MSMg01no118_f10.g1)
ACCAG329238AG329239
length721712
length of high quality
(start - end)
190 (44 - 233)---
definitionCHROMAT_FILE: MSMg01no118_f10.b1 PHD_FILE: MSMg01no118_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:09 2005CHROMAT_FILE: MSMg01no118_f10.g1 PHD_FILE: MSMg01no118_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATGCGCGGAAT
TCTCCTTAGTACCCCGTCACTGTATGCAAAAGACCTCGGAGTGCGGTCTC
TTTCCCTGGCATGTGCTTTAAGATAAGGACTCTGTTTCCATACAGGTTGT
ATATTACTATTTACAGACATACAGCTTTTGTGATTGCTCTTCATTCATCA
ATGTTTTCATGTTGGATGCTGAAAATGCTTTGGAATCCATGTTGCAGACA
TTTTCTTAAAACAAATCAAAACAAAAAAGGACTGATAAGTGACTTTTCAT
TTAGAGGATATTCAGGTTCACATTGCTTGCACAGCGTTTGGATCTCGAAA
CATGAACGATTCTCATCTTTGTCATGTACACCTGTATGTATTATAAACAT
AAGATCCTGATGTCCCCCCCTGCTTCATTTGACCCCTTCAAGGAATATGC
GCAGTGTATACTCACGTGCTTTACGCTTTTGTCATTCTCTGCTACATGTT
TATTACAATACAATTACCAATGACCTACTTATACGCGCCATGTCTTGTTT
TCACACCCCCCTTATGTTCTTTTATCCCCATTCCTCGTCTATTCACCTTC
GCCTTTACTTTATTTGTATCCCCCTTTCAACCTGTTTTTTTAGCCCTTTA
TTGATTACATTTGTTTCTCCCCCTTCTTTCCCCCCCTACCTTACTTACCA
CCCGTTTTTCCCCTTTCTCCT
CATGCAGTGTTAGGCTGGCGGCGCCTGGTTTCAAATTAAGGTGATCTATA
CAACGTCCCCGTATTCCCTAGGAGGAGGGGAAACCTGCTCCTTTGTACAG
TCTAGCCTATCCGTGTGCCATAGGTTATAGCAGGACGAGGCCCTAGAGCC
ACTGCTGAGAGATGCCAGGGTCCCTGCGCCCTTATTGTCTTGGTCGATAC
CTGAGCACTATGCCTGATCATTTGTAACTACCCTGCTTCATTACTTTTGC
CTTGCAATCAGCATTTCCTACATTGTACGCGTCGTTTCTCACAGTATCCC
CATTTCCCACCGTTGCCTATTTTACTGAACAGCCGCCCCATACGGGTTCA
GAACTTTATTCTGCCCTGTATCACGACCTGACTTTATTCACAGTATCATC
AATTACTTACCCACGATACTGCGTGCATTTTCAGTTACTGTACTCTGGAT
ACCCCCTGTGAGGCTTACCGATTATGAACATGATGGCCCCTGTCTCTTGC
CTTATCCCTTGCTGTTACATATGCCCTTATGGTATCTTGCACCCCTCAGA
CCGATGCTTTTTGTTTTTGCTCGCCACCGCACTTTTCTTTTCCGTTCCGC
CTCCCCCCTCTCCCTGCCTCTTCCTCCCGCCCTCTTTATTTGTTTCTTGC
TCCACCTCTTCTACTTCTAACCCCTACCTCCCCTTTATCCTTACCTCTCT
CCTCCAATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_f10.b1 MSMg01no118_f10.b1 CHROMAT_FILE:
MSMg01no118_f10.b1 PHD_FILE: MSMg01no118_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:09 2005
         (190 letters)



>mm_chr14_29289606_29290195
          Length = 590

 Score =  346 bits (179), Expect = e-100
 Identities = 185/187 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctccttagtaccccgtcactgtatgcaaaagacctcggagtgcggtctctttccc 63
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gaattctccttagtaccttgtcactgtatgcaaaagacctcggagtgcggtctctttccc 331

                                                                       
Query: 64  tggcatgtgctttaagataaggactctgtttccatacaggttgtatattactatttacag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tggcatgtgctttaagataaggactctgtttccatacaggttgtatattactatttacag 271

                                                                       
Query: 124 acatacagcttttgtgattgctcttcattcatcaatgttttcatgttggatgctgaaaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 acatacagcttttgtgattgctcttcattcatcaatgttttcatgttggatgctgaaaat 211

                  
Query: 184 gctttgg 190
           |||||||
Sbjct: 210 gctttgg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)