BAC Information

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BAC

Clone NameMSMg01-118M07
Chromosome14 (Build37)
Map Location 36,803,910 - 36,804,559
singlet/doubletsinglet
Overlap genenone
Upstream geneGrid1, 4930596D02Rik, LOC100040277
Downstream geneLOC665933, 4930474N05Rik, Gcap14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118M07.T7 (MSMg01no118_m07.b1)MSMg01-118M07.TJ (MSMg01no118_m07.g1)
ACCAG329559AG329560
length696699
length of high quality
(start - end)
649 (48 - 696)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no118_m07.b1 PHD_FILE: MSMg01no118_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:43 2005CHROMAT_FILE: MSMg01no118_m07.g1 PHD_FILE: MSMg01no118_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGG
AATTCACTTTACATATCAGGCTAGCAGTGGACCAATAACATCTGCCACCA
CAATTGCCAAATTCTCCCAGATTGTTAGCATGCAATTGTTCTGAAATGCC
CACCTTTGGGAAACTTAGAGAACACTAGGTACCCAGTCCCACTTGTTTGC
CAGATCAAGGCTTCCCCCTCCAACCCAAGTCTCCCCTGTGCCTCCTCCTT
CTCTGGCTCACACACTCTCAACTAAGAGGACAGTGACTCACACTAATTAT
ACAGTAACATTTTTCCCTCTAACAGCAGCTGGGACTTTCTATTTTTTTTC
CAGCTATTTATAACTCACTTAGACAAGGAAGCCTCCTCCTACCCCACCCA
CCCCAAGTAAAATTTCTCTGGGGTGGATCTGGTTTTATCTAAATTGGTTG
GACAGACTTACAAAGCATATATAATCCATACTGAAAAAAGATAAGGCTTT
CTCCTTGTACTGGATATAAAAATAACCAACAGGCAAATGAACATGGATAG
GGAAAAATTAATTTACTTCCCTGCTTAATTAGCAGATGCAAGATAACTGT
ATCTGCTTAGCTCCCTAATTATAATAACACATAAGAGTTAAGTGAAACTC
TTCATCATCAAAAATACCACCTTCTCCCGACACTAAATCATTAGTC
NACTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATCT
TTTAAGGGGGTTATTTGATTTTCTGGAGTCCACCCTCTTGAGTTCTTTAT
ATATATTGGATATTAGTCCCCTATCTGATTTAAGATAGGTAAAGATCCTT
TCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGATGGTGTCTTTTGCCTT
GCAGAAGCTTTGCAGTTTCATGAGGTCCCATTTGTCAATCCTCGATCTTA
CAGCACAATTCAGTGTGCCTGCATATTACATTGATAATTTTGTTAAAATG
CAGATTCTTATTCAGTATGTGTGAAATTCTGAACCTTAAATAAACATTTG
AGCGATGCTGAGGCTGCTGATCCCCATATACATGTCAAGTAGCAAAGCTT
CCGATGGTCAGACGTTCTCTACACAGACTTGGGGCTGGAAGCAGGATGGT
TTCCCTTCCCTGCCTGAGGATATTCACCAGTGGGTAACATAGCTACCGTG
CTGCCACTGGAATCTAGTGGGTAGAGGTCCAGGGATGTTTGCTAAAGTTC
CTGTAATGTGCAAGATTACATTACGACAAAGAACTACCTGGCCCATGTCC
TGCTTAAGGCGAACACAGGTTTGTATCTGGTGAACTCGTGCTTTAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_m07.b1 MSMg01no118_m07.b1 CHROMAT_FILE:
MSMg01no118_m07.b1 PHD_FILE: MSMg01no118_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:43 2005
         (649 letters)



>mm_chr14_36803709_36804759
          Length = 1051

 Score = 1180 bits (610), Expect = 0.0
 Identities = 640/650 (98%), Gaps = 2/650 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggaattcactttacatatcaggctagcagtggaccaataacatctgccaccacaattgcc 61
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 ggaattcactttacagattaggctagcagtggaccaataacatctgccaccacaattgcc 792

                                                                       
Query: 62  aaattctcccagattgttagcatgcaattgttctgaaatgcccacctttgggaaacttag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 aaattctcccagattgttagcatgcaattgttctgaaatgcccacctttgggaaacttag 732

                                                                       
Query: 122 agaacactaggtacccagtcccacttgtttgccagatcaaggcttccccctccaacccaa 181
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 agaacactaggtacccagccccacttgtttgccagatcaaggcttccccctccaacccaa 672

                                                                       
Query: 182 gtctcccctgtgcctcctccttctctggctcacacactctcaactaagaggacagtgact 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gtctcccctgtgcctcctccttctctggctcacacactctcaactaagaggacagtgact 612

                                                                       
Query: 242 cacactaattatacagtaacatttttccctctaacagcagctgggactttcta-tttttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 611 cacactaattatacagtaacatttttccctctaacagcagctgggactttctattttttt 552

                                                                       
Query: 301 ttccagctatttataactcacttagacaaggaagcctcctcctaccccacccaccccaag 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tttcagctatttataactcacttagacaaggaagcctcctcctaccccacccaccccaag 492

                                                                       
Query: 361 taaaatttctctggggtggatctggttttatctaaattggttggacagacttacaaagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 taaaatttctctggggtggatctggttttatctaaattggttggacagacttacaaagca 432

                                                                       
Query: 421 tatataatccatactg-aaaaaagataaggctttctccttgtactggatataaaaataac 479
           |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 431 tatataatccatactgaaaaaaagataaggctttctccttgcactggatataaaaataac 372

                                                                       
Query: 480 caacaggcaaatgaacatggatagggaaaaattaatttacttccctgcttaattagcaga 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 371 caacaggcaaatgaacatggatagggaaaaattaatttacttccctgcttaattagtaga 312

                                                                       
Query: 540 tgcaagataactgtatctgcttagctccctaattataataacacataagagttaagtgaa 599
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 311 tgcaagataactgtatctgcttagctccctaattataataacacttaagagttaagtgaa 252

                                                             
Query: 600 actcttcatcatcaaaaataccaccttctcccgacactaaatcattagtc 649
           ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 251 actcttcatcatcaaaaataccaccttctcctgacactaaatcattagtc 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1051
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1041
Effective search space:   665199
Effective search space used:   665199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)