Query= MSMg01no119_f04.b1 MSMg01no119_f04.b1 CHROMAT_FILE:
MSMg01no119_f04.b1 PHD_FILE: MSMg01no119_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:26 2005
(437 letters)
>mm_chr14_83545759_83546595
Length = 837
Score = 791 bits (409), Expect = 0.0
Identities = 430/437 (98%)
Strand = Plus / Plus
Query: 1 actcctagccactcccattctcggggtgtaatagtggggtgatgggcaagcaacgaatcg 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 actcctagtcactcccattctcggggtgtaatagtggggtgatgggcaagcaactaatca 260
Query: 61 ggagctgtcacgccatatcaggtgctgaaacgtcacgctgcgggttataaaagcagcgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagctgtcacgccatatcaggtgctgaaacgtcacgctgcgggttataaaagcagcgcc 320
Query: 121 attttcccagtttgggatcttcctgagaagcaagcaataaagctcttgccgcagaagatt 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttcccagttcgggatcttcctgagaagcaagcaataaagctcttgccgcagaagatt 380
Query: 181 ctggtttgttgcgtctttcttgcaggtcgagcaggacacaatactccctccccagttctg 240
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 381 ctggtttgttgcgtctttcttgccggtcgagcaggacgcaatactccctccccagttctg 440
Query: 241 ggaggaaagttatgcacccccactaccctgtgaacctcagaaaattttaattattagcat 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 ggaggaaagttatgcacccccactaccctgtgaacctcagaaatttttaattattagcat 500
Query: 301 atgatagaatatcagattaggcctatttatacaatcctgttaaatgcattgcttttctcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgatagaatatcagattaggcctatttatacaatcctgttaaatgcattgcttttctcc 560
Query: 361 cagatatgcccaggagagaatatcagggccaggaattgggagaggttgggttggggagca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagatatgcccaggagagaatatcagggccaggaattgggagaggttgggttggggagca 620
Query: 421 gggtggggggatgggta 437
|||||||||||||||||
Sbjct: 621 gggtggggggatgggta 637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space: 354384
Effective search space used: 354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_f04.g1 MSMg01no119_f04.g1 CHROMAT_FILE:
MSMg01no119_f04.g1 PHD_FILE: MSMg01no119_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:26 2005
(610 letters)
>mm_chr14_83611047_83612055
Length = 1009
Score = 998 bits (516), Expect = 0.0
Identities = 567/584 (97%), Gaps = 1/584 (0%)
Strand = Plus / Minus
Query: 27 aaataattattaagcatttcataataatcttttaaagataaaatgagaacaggaaactaa 86
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1001 aaataattattaagcatttcataataatcttttaaagataaaatgagcacaggaaactaa 942
Query: 87 atatggaacatgaataaaaaatttatacaaaattatcattactttagaatattttattgc 146
|||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 941 atatggaacatgaatacaaaatttacacaaaattatcattattttagaatattttattgc 882
Query: 147 ctatggtagtcaaaagaccaaagaaaatatagctggactcattacatttataattaataa 206
|||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 881 ctatggtagtcataagaccaaagaaaatatagctggactcattacaattatagttaataa 822
Query: 207 attatatttaaagactacttaaagtatattatgtatgtataagttcatacatgcatattc 266
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 821 attatatttaaagactacttaaagtatattatgtatgcataagttcatacatgcatattc 762
Query: 267 tgtatgtcatttaaatatacattgcttgcatataaacattaaatttttgtgaagtactaa 326
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 761 tgtatgtcatttaaatatacattgcttgcatataaacattaaatttttatgaagtactaa 702
Query: 327 tgtttcattcactagatgattaatggacaacacttcctcattataaaaatcattaatagt 386
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 701 tgtttcattcactagatgattaatgggccacacttcctcattataaaaatcattaatagt 642
Query: 387 caggcttaaagaaacttcaagcatattcaaaatattttatttaaacaaaaacctttaaat 446
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 641 caggcttaaagaaacttcaagcatattcaaaatattttatttaaacaaaaaactttaaat 582
Query: 447 tggaaaataatagtttgtaacagagatccacccttcattccggtcaaatgtttcaaatgg 506
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 581 tggaaaataatagtttgtaacagagatccacccttcattcagatcaaatgtttcaaatga 522
Query: 507 tttactagatatgattctgtagcataagtacttccatatgctacttaaaacaatacatat 566
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tt-attagatatgattctgtagcataagtacttccatatgctacttaaaacaatacatat 463
Query: 567 tatctctatttttgtcaacgtgagattcaggagtccattagacc 610
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tatctctatttttgtcaacgtgagattcaggagtccattagacc 419
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1009
Length adjustment: 10
Effective length of query: 600
Effective length of database: 999
Effective search space: 599400
Effective search space used: 599400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
