BAC Information

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BAC

Clone NameMSMg01-119L07
Chromosome14 (Build37)
Map Location 16,906,521 - 16,907,082
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc3b, LOC667205, 1700062C10Rik
Downstream geneLOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb, Tpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119L07.T7 (MSMg01no119_l07.b1)MSMg01-119L07.TJ (MSMg01no119_l07.g1)
ACCAG330257AG330258
length708708
length of high quality
(start - end)
572 (44 - 615)562 (73 - 634)
definitionCHROMAT_FILE: MSMg01no119_l07.b1 PHD_FILE: MSMg01no119_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:56 2005CHROMAT_FILE: MSMg01no119_l07.g1 PHD_FILE: MSMg01no119_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAAT
TCTCTTTATTACCTGTTTTCCTGGGTTGGCTCATGACACATGTTATTGTT
TTGAATGACTCCAACCCTGAGTGACCAGTTTTAAGTTAACTTTCTGTTAC
AAATGTTGCAAATTTTTAATCATACCCAATAACTTATAAGCCAATACTCT
ATTATCAAGACATACAGAACATAATTATACTTTTAAAACCAGTCAGAAAC
AAAAATGAAGTGGCTACATACATCTTATATATTTAGACCAAACAAAATTT
TCTTGCTTTTTCTAGCTATAATTTCAAGAGAAAAAAAAAAAAAAAAAAAA
AAAAAAACCTTGTCACTTGCTGAACCCAATAAACACAATTGCAAAGATTT
TTCCAGGAAAAAAACAGCTTACTTGCCATAGAAATTGAGAAGTTGCTGGC
CCCTTTCAAAGCAGCTTTTTTCCACCTGTGCTTGACTCCCAGCTATAGTG
CAGGGTAACTTATCAGTTTCTGCTATACAAACTGAGACTGCCTTCTAAAC
AAGTTAAATTAAATCAAGGAATGGATTGCTAGCAGATAAAATTTTAACCA
GTTTTTTTTTTCTTTTCAACTTGAACCACAGCAAACTTTGAACCAAATAT
AGACTTACGTTGGCACATTTGGATTTATTGGCCCCCCAAGGTACAGACTA
TAGACTGT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGCTATAATTTATGGGGCAATTTGAGC
TGTGCTTCTCATAGAGAGGTAGTGTCTACAGATTTGTTTCCCAAAGCAGT
AAGCTTTGGTTCAACCTTCTCAGGATGGCTCCCTATTACAACACGAAACA
TTTATGTAAAACATAAATGCCATCATGCTGTGCAAATACCAGATCAGCTA
AGTCAGGCTGCCTTTCTGCTGGCTTTTAGCTGTGCCTGTTTTGCCAGATC
TGTCTTTTCATCTTTCTCAGCTGGCCTTCTGCCATGTCACAGGGCTGCCC
TTGCTTTGGCACTAATTGCCCCTCTTCTAATAGCTCATCTCTTTGGGCCT
CCCTAAATTGTATTTGTCAAATACAGAGCTTCAGTTTGTCCTCACAGTCT
CCCACTGGCCAAGAAGTTATTCTCTGCCTGTTTTCATTACAAGTTGGAAT
TAAAAACAGCTTGCTTCTAGCCTGCCATCTTTGAGACCTGTTAATTTATT
TTTAGACATTTCCTTGACTTTTGGATAATTTGGGAGTCAATTTGTTTAAT
TCCTAAACATTTTAGATTATCCCAAATTTGCATATTGTTGTGGATCTGAA
AGAACACACCACATGATTACAGCTCTGTGAAATCTATTGAAACTTGCTTC
TCACCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_l07.g1 MSMg01no119_l07.g1 CHROMAT_FILE:
MSMg01no119_l07.g1 PHD_FILE: MSMg01no119_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:56 2005
         (562 letters)



>mm_chr14_16906321_16907282
          Length = 962

 Score = 1071 bits (554), Expect = 0.0
 Identities = 560/562 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgctataatttatggggcaatttgagctgtgcttctcatagagaggtagtgtctacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ttgctataatttatggggcaatttgagctgtgcttctcatagagaggtagtgtctacaga 703

                                                                       
Query: 61  tttgtttcccaaagcagtaagctttggttcaaccttctcaggatggctccctattacaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tttgtttcccaaagcagtaagctttggttcaaccttctcaggatggctccctattacaac 643

                                                                       
Query: 121 acgaaacatttatgtaaaacataaatgccatcatgctgtgcaaataccagatcagctaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 acgaaacatttatgtaaaacataaatgccatcatgctgtgcaaataccagatcagctaag 583

                                                                       
Query: 181 tcaggctgcctttctgctggcttttagctgtgcctgttttgccagatctgtcttttcatc 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 582 tcaggctgcctttctgctggcttttagctgtgcctgttttgccagctctgtcttttcatc 523

                                                                       
Query: 241 tttctcagctggccttctgccatgtcacagggctgcccttgctttggcactaattgcccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tttctcagctggccttctgccatgtcacagggctgcccttgctttggcactaattgcccc 463

                                                                       
Query: 301 tcttctaatagctcatctctttgggcctccctaaattgtatttgtcaaatacagagcttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tcttctaatagctcatctctttgggcctccctaaattgtatttgtcaaatacagagcttc 403

                                                                       
Query: 361 agtttgtcctcacagtctcccactggccaagaagttattctctgcctgttttcattacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agtttgtcctcacagtctcccactggccaagaagttattctctgcctgttttcattacaa 343

                                                                       
Query: 421 gttggaattaaaaacagcttgcttctagcctgccatctttgagacctgttaatttatttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gttggaattaaaaacagcttgcttctagcctgccatctttgagacctgttaatttatttt 283

                                                                       
Query: 481 tagacatttccttgacttttggataatttgggagtcaatttgtttaattcctaaacattt 540
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 282 tagacatttccttgacttttggataacttgggagtcaatttgtttaattcctaaacattt 223

                                 
Query: 541 tagattatcccaaatttgcata 562
           ||||||||||||||||||||||
Sbjct: 222 tagattatcccaaatttgcata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)