BAC Information

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BAC

Clone NameMSMg01-119L08
Chromosome14 (Build37)
Map Location 103,587,762 - 103,588,276
singlet/doubletsinglet
Overlap genePhr1
Upstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441
Downstream geneLOC100043797, Scel, LOC100043448, Slain1, Ednrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119L08.T7 (MSMg01no119_l08.b1)MSMg01-119L08.TJ (MSMg01no119_l08.g1)
ACCAG330259AG330260
length707703
length of high quality
(start - end)
516 (72 - 587)423 (77 - 499)
definitionCHROMAT_FILE: MSMg01no119_l08.b1 PHD_FILE: MSMg01no119_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:56 2005CHROMAT_FILE: MSMg01no119_l08.g1 PHD_FILE: MSMg01no119_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGGTTTATTACTGTAACGTGCTTTATAGTGATAAAAGAGCCT
GGTAGAGTAAAAGAAATAAGTGATGTGTGAGAGAAAGTGATGCTGTTGAG
GAGACCACATGCCCATGGGAAAAACCTGTCTTTAGATAAGAACCGCATTG
CTCCTTCCACTGTAACCTGAGAGAAAATGAAGGAAAGAAAATTGGTTTTC
CAGTCTGATTATTAATGGAGATTATAACCAGTTGTTTCTATTTCCACAGA
AGGGAAAAGGGAAATCATGATGATTTTAGAGTGTGAAGGAGACGTAACGG
GGCTATAGGGAAAGAGTGAAACTCACGTGTGTGTGAGCTGAGGAACATGC
CGTGACAGCTACAAGGTTGCAGGCAGTGTGCTGATGCAGACACAGTCACT
GAAGTGGTAAATGACGGTAACTGCATAATCAAAAGTAAACTTTTTTGCTA
TCCACTTTTTAATTCAGGCCCAGCGAAAATATGCTTATTCGTGTCAATAA
CGATGGGACCTACTGCGCAAACTGGACTCCAGGGGCTATCGGGCTCTACA
CTGCTCATGTGACCATTGATGGCATCGAATTACGCTAATAGAGTGTTAAG
CAAGAAGTTGCTGCCCAGAATTAGAATTAAACTCATCCTTGTATCGTTTA
CCCTTGT
CCCCCGCTGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTT
TTAATGGGTTTATTTGATTTTCTGGAGTCCACCTTCTGAGACAAAAGGAT
GGACCATCTAGAGACTGCCATACCCAGGGATCCATCCCATAATCAGCCTC
CAAACGCTGACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCC
TGATATAGCTGTCTCTTGTGAGACTATGCCGGGGCTTGGCAAGCACAGAA
GTGGAAGCTCACAGTCATTTATTGGATGGATCACAGGGCACCCAATGGAG
GAGCTAGAGAAAATACCCAAGGAGCTAAAGGGGTCTGCAACCCTATAGGT
AGAACAACAATATGAACTAACCAGTACCCCCCGGAGCTCGTGTCTCTAGC
TGCATATTTATCATAAGATGGCCTAGTCGGCCATCAGTGGAAAGAGAGGC
CCATTGGTCATGCAAACTTCATATGCCTCAGTACAGGTGAACGCCAGGGC
CAATAACTGGTAGTGGGCGGGTTGGGGTAATGGTTGCTCCCCCCACTTCC
TTTCTTCCATCCCCCACTTTTTCTTCTTATTTACCCCATCCCTCTTTTTT
TACCATAAACTTGCTACCCATAATAACGCCTTACCTCTATCCCTGCCCCC
TCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_l08.b1 MSMg01no119_l08.b1 CHROMAT_FILE:
MSMg01no119_l08.b1 PHD_FILE: MSMg01no119_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:56 2005
         (516 letters)



>mm_chr14_103587562_103588476
          Length = 915

 Score =  936 bits (484), Expect = 0.0
 Identities = 508/516 (98%), Gaps = 1/516 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taacgtgctttatagtgataaaagagcctggtagagtaaaagaaataagtgatgtgtgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 taacgtgctttatagtgataaaagagcctggtagagtaaaagaaataagtgatgtgtgag 656

                                                                       
Query: 61  agaaagtgatgctgttgaggagaccacatgcccatgggaaaaacctgtctttagataaga 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 agaaagtgatgctgctgaggagaccacatgcccatgggaaaaacctgtctttagataaga 596

                                                                       
Query: 121 accgcattgctccttccactgtaacctgagagaaaatgaaggaaagaaaattggttttcc 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 595 accgcattgctccttccactgtaacctgagagagaatgaaggaaagaaaattggttttcc 536

                                                                       
Query: 181 agtctgattattaatggagattataaccagttgtttctatttccacagaagggaaaaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 agtctgattattaatggagattataaccagttgtttctatttccacagaagggaaaaggg 476

                                                                       
Query: 241 aaatcatgatgattttagagtgtgaaggagacgtaacggggctatagggaaagagtgaaa 300
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aaatcatgatgagcttagagtgtgaaggagacgtaacggggctatagggaaagagtgaaa 416

                                                                       
Query: 301 ctcacgtgtgtgtgagctgaggaacatgccgtgacagctacaaggttgcaggcagtgtgc 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ctcaggtgtgtgtgagctgaggaacatgccgtgacagctacaaggttgcaggcagtgtgc 356

                                                                       
Query: 361 tgatgcagacacagtcactgaagtggtaaatgacggtaactgcataatcaaaagtaaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 355 tgatgcagacacagtcactgaagtggtaaatgacggtaactgcataatcaaaagtaaac- 297

                                                                       
Query: 421 tttttgctatccactttttaattcaggcccagcgaaaatatgcttattcgtgtcaataac 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 296 tttttgctatccactttttaattcaggcccagtgaaaatatgcttattcgtgtcaataac 237

                                               
Query: 481 gatgggacctactgcgcaaactggactccaggggct 516
           |||||||||||||| |||||||||||||||||||||
Sbjct: 236 gatgggacctactgtgcaaactggactccaggggct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 915
Length adjustment: 10
Effective length of query: 506
Effective length of database: 905
Effective search space:   457930
Effective search space used:   457930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)