BAC Information

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BAC

Clone NameMSMg01-119M18
Chromosome14 (Build37)
Map Location 46,695,245 - 46,695,709
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379, LOC666834, LOC100041685, LOC625377
Downstream geneLOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119M18.T7 (MSMg01no119_m18.b1)MSMg01-119M18.TJ (MSMg01no119_m18.g1)
ACCAG330327AG330328
length720719
length of high quality
(start - end)
583 (63 - 645)466 (68 - 533)
definitionCHROMAT_FILE: MSMg01no119_m18.b1 PHD_FILE: MSMg01no119_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:02 2005CHROMAT_FILE: MSMg01no119_m18.g1 PHD_FILE: MSMg01no119_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGAAGGCGCGGAATTCT
TTGTTCTTTCCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAA
GTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTG
ATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTC
TTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTC
CCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCA
GGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCC
TCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTT
GGATTTGACCTTACTACAAGGAGATAAGTATGGATCGATTCGCATTCTTC
TACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCT
TTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATA
GGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTT
GTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAG
TAAAGCTTTATGTCTGGCATGGTGATTCCGGCAGAAGTTCTTTTATCCTT
GAGAAGACTTTTTGCTATCC
ATGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGCACCAGCTGTGTGTCTGAGAAACCAAGGGAC
TGATTAAGTCTGTCACATGGACTGCTTCTAATCCTGAGTGGTAGGTGTAT
ACCTAGCGTTCAGCAAATCTGCTCAAGCAAGGCCAACTTCAAAGATAGTG
TGTCGGGGTGTTCAGACAATATTTGGAGGTGACTGTGTAGATGATAGCTG
GAGGGGGAGGAGAATAAAATGCTTCAAAACAGTTGAGGTTAGTCTCCCCC
TCCCAAATCATTGAAATTCACTGAAGACCAAGATATTTTGAGGTCTCTTA
ACAGTGATTTAATACTTCTTTTCGGTTTAGGGGAACTTTGTATGCAAAAG
GAAGATAAAATAAGTATGACAAATTAGTAGCGTTTCTATTTTAATAAGGA
GTAAACTTCAAATGGAAACAGGAGACATCCTGTCTACAAGGACCGTTAGC
CAACTGCTTGATGCATGTGTCTGCAAAGACGGGTGGGCATCATCCAATGG
GTACAGATGGGATGATTTAGGGACAAACAATCCTTATTTTGTTACTTCTG
TGCAATCTCTTGGACATACCTACCTTTATAAGAATTCTGCTATATAGATA
TAAAAGCCTTACGTACACATCAAGAAATTCTACAGAAAGTGTCTTGGCTA
ATACCCTAGGTTATTAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_m18.g1 MSMg01no119_m18.g1 CHROMAT_FILE:
MSMg01no119_m18.g1 PHD_FILE: MSMg01no119_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:03 2005
         (466 letters)



>mm_chr14_46695045_46695910
          Length = 866

 Score =  884 bits (457), Expect = 0.0
 Identities = 463/465 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcaccagctgtgtgtctgagaaaccaagggactgattaagtctgtcacatggactgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcaccagctgtgtgtctgagaaaccaagggactgattaagtctgtcacatggactgctt 260

                                                                       
Query: 61  ctaatcctgagtggtaggtgtatacctagcgttcagcaaatctgctcaagcaaggccaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaatcctgagtggtaggtgtatacctagcgttcagcaaatctgctcaagcaaggccaac 320

                                                                       
Query: 121 ttcaaagatagtgtgtcggggtgttcagacaatatttggaggtgactgtgtagatgatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaaagatagtgtgtcggggtgttcagacaatatttggaggtgactgtgtagatgatag 380

                                                                       
Query: 181 ctggagggggaggagaataaaatgcttcaaaacagttgaggttagtctccccctcccaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggagggggaggagaataaaatgcttcaaaacagttgaggttagtctccccctcccaaa 440

                                                                       
Query: 241 tcattgaaattcactgaagaccaagatattttgaggtctcttaacagtgatttaatactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcattgaaattcactgaagaccaagatattttgaggtctcttaacagtgatttaatactt 500

                                                                       
Query: 301 cttttcggtttaggggaactttgtatgcaaaaggaagataaaataagtatgacaaattag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 cttttcggtttaggggaactttgtatgcaaaaggaagataaaataagtaggacaaattag 560

                                                                       
Query: 361 tagcgtttctattttaataaggagtaaacttcaaatggaaacaggagacatcctgtctac 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagtgtttctattttaataaggagtaaacttcaaatggaaacaggagacatcctgtctac 620

                                                        
Query: 421 aaggaccgttagccaactgcttgatgcatgtgtctgcaaagacgg 465
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaggaccgttagccaactgcttgatgcatgtgtctgcaaagacgg 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)