BAC Information

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BAC

Clone NameMSMg01-120F06
Chromosome14 (Build37)
Map Location 73,970,592 - 73,970,965
singlet/doubletsinglet
Overlap geneSucla2
Upstream geneFndc3a, LOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15
Downstream geneLOC100043734, EG629578, LOC629583
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120F06.T7 (MSMg01no120_f06.b1)MSMg01-120F06.TJ (MSMg01no120_f06.g1)
ACCAG330723AG330724
length703715
length of high quality
(start - end)
492 (46 - 537)542 (76 - 617)
definitionCHROMAT_FILE: MSMg01no120_f06.b1 PHD_FILE: MSMg01no120_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:43 2005CHROMAT_FILE: MSMg01no120_f06.g1 PHD_FILE: MSMg01no120_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCG
CGGAATTCTCTGATTCCCTAGGTGCTTCTTCTCCCATGAATGAGGTATCC
TAGTCTGAAGAGGACATGCATGGTATGTACTCACTTATAAGTGGACATGA
GCCATAAAATATAGATACCATGGTACACTCCACAGACTCAAAGAAGCTAA
ACAAGAAGGGAAGCCCAAGGGAGGAAGCTTGAATCTCACTTAGAATTCCT
TCTAATAAAATAGCCATAAGAGGCAGATGAAGGGAGGGAACTGGGAGGGA
GGAGGGATGCGGACAGGAAGGGGGGTTCAGGATCAGGTGTGGGGAAGGAC
AGAGAGATGGCCAGATGACCATAAAATGAATGGAAATCTGCAACTGATGG
GGATAAGGAGGTGGGGGGCATCTCCAGGATGAGACAGAGACCTGGGATGA
GGGACATGCCTAATAATCAGTGGGGGTGACCTTAGCTGTGACTCACTACA
TTGCGGATATGAAATCCAAAGAGGCCACCCTATGTAGCCAGGTTGTAACC
CCAGTGACACTAATCCACCCACAACACTTTCAACCCAAAATTTATTCTGT
CTACAACAAATGCAGGCAAGGGGCATGGAGCAGTGACTGAGGCAATGGCC
AACCCACGACCGAGTACGTGACTTTTATTGGGGCGATGGGGCCATGCACC
CGT
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGTCAGGGCTACACGGAAA
AACCGTCTCAAAAAACTAAATGAATGAATGAGTATATATTTACACTAATA
ATGTTATTTTTACTTTCATAAACCTAAGTTCTTTGTCCCTCAAGAATCCT
TGTCTTAAAATAAGTTTGAATTTAAAGTATAAAATAAAGATCTATTGGGC
TGGAGAGATGGCTCAGCTAAAGTTAAGAGCACTGACTGCCCTTCCAGAGG
TCCTGAGTTCAATTCCCAGCAACCATATGGTGGCTCACAACTATCTGTAA
TGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACATCGACAGTGTACT
CATATACAGAAAATAAATAAATCTTAAAAAAAAAAAGTCTTTAAGATAAA
GATCTACTTGAGAAAAACTTAATGAAAACTTTTGGAATTGCTTTAGTACC
TTTCACACATCTATTTCAGGCAAAGCCAAACCCTGACAGCCAGAAGGAGC
ACTTGCTCAGCAGACTGTCAAGTTTTACTAGAAAAGTAAAACAGCAAAGG
CCATCTGATGAATTCTGTTTTCTCAGGGCAAAGTCAATACCAAACGGCAG
TAGGCAAATGTCACATCTCACGAAGTGCTAGTGAAGGTAAGGTGATGTCT
GTCAGTCTGACACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_f06.g1 MSMg01no120_f06.g1 CHROMAT_FILE:
MSMg01no120_f06.g1 PHD_FILE: MSMg01no120_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:44 2005
         (542 letters)



>mm_chr14_73970550_73971491
          Length = 942

 Score =  685 bits (354), Expect = 0.0
 Identities = 367/374 (98%), Gaps = 5/374 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagtcagggctacacggaaaaaccgtctcaaaaaactaaatgaatgaatgagtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 caggacagtcagggctacacggaaaaaccgtctcaaaaaactaaatgaatgaatgagtat 357

                                                                       
Query: 61  atatttacactaataatgttatttttactttcataaacctaagttctttgtccctcaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 atatttacactaataatgttatttttactttcataaacctaagttctttgtccctcaaga 297

                                                                       
Query: 121 atccttgtcttaaaataagtttgaatttaaagtataaaataaagatctattgggctggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 atccttgtcttaaaataagtttgaatttaaagtataaaataaagatctattgggctggag 237

                                                                       
Query: 181 agatggctcagctaaagttaagagcactgactgcccttccagaggtcctgagttcaattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 agatggctcagctaaagttaagagcactgactgcccttccagaggtcctgagttcaattc 177

                                                                       
Query: 241 ccagcaaccatatggtggctcacaactatctgtaatgggatctgatgccctcttctggtg 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ccagcaaccacatggtggctcacaactatctgtaatgggatctgatgccctcttctggtg 117

                                                                       
Query: 301 tgtctgaagacatcgacagtgtactcatatacagaaaataaataaatctt-----aaaaa 355
           ||||||||||||||||||||||||||| ||||||||||||||||||||||     |||||
Sbjct: 116 tgtctgaagacatcgacagtgtactcacatacagaaaataaataaatcttaaaaaaaaaa 57

                         
Query: 356 aaaaaagtctttaa 369
           ||||||||||||||
Sbjct: 56  aaaaaagtctttaa 43


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)